LEAP: constructing gene co-expression networks for single-cell RNA-sequencing data using pseudotime ordering. - Alicia T. Specht; Jun Li 052 (Bioinform., 2017)

Widespread position-specific conservation of synonymous rare codons within coding sequences. - Julie L. Chaney; Aaron Steele; Rory Carmichael; Anabel Rodriguez; Alicia T. Specht; Kim Ngo; Jun Li 052; Scott J. Emrich; Patricia L. Clark (PLoS Comput. Biol., 2017)