Distinguishing between Genomic Regions Bound by Paralogous Transcription Factors. - Alina Munteanu; Raluca Gordân (RECOMB, 2013)

COUGER - co-factors associated with uniquely-bound genomic regions. - Alina Munteanu; Uwe Ohler; Raluca Gordân (Nucleic Acids Res., 2014)

SSMART: sequence-structure motif identification for RNA-binding proteins. - Alina Munteanu; Neelanjan Mukherjee; Uwe Ohler (Bioinform., 2018)

Computational models to investigate binding mechanisms of regulatory proteins - Alina Munteanu (2018)