Nonparametric Entropy-Based Coupled Multi-Shape Medical Image Segmentation. - Alireza Akhondi Asl; Hamid Soltanian-Zadeh (ISBI, 2007)

Comparison of Linear and Nonlinear Models for Estimating Brain Deformation Using Finite Element Method. - Hajar Hamidian; Hamid Soltanian-Zadeh; Alireza Akhondi Asl; Reza Faraji-Dana (CSICC, 2008)

Constrained optimization of nonparametric entropy-based segmentation of brain structures. - Alireza Akhondi Asl; Hamid Soltanian-Zadeh (ISBI, 2008)

Effect of Number of Coupled Structures on the Segmentation of Brain Structures. - Alireza Akhondi Asl; Hamid Soltanian-Zadeh (J. Signal Process. Syst., 2009)

Multiple-atlas-based automatic sementation of hippocampus for lateralization in temporal lobe epilepsy. - Alireza Akhondi Asl; Kourosh Jafari-Khouzani; Hamid Soltanian-Zadeh (ISBI, 2010)

Three-dimensional coupled-object segmentation using symmetry and tissue type information. - Payam B. Bijari; Alireza Akhondi Asl; Hamid Soltanian-Zadeh (Comput. Medical Imaging Graph., 2010)

Web-based interactive 2D/3D medical image processing and visualization software. - Seyyed Ehsan Mahmoudi; Alireza Akhondi Asl; Roohollah Rahmani; Shahrooz Faghih-Roohi; Vahid Taimouri; Ahmad Sabouri; Hamid Soltanian-Zadeh (Comput. Methods Programs Biomed., 2010)

Cortical brain structures segmentation using constrained optimization and intensity coupling. - Alireza Akhondi Asl; Simon K. Warfield (ISBI, 2011)

Whole brain group network analysis using network bias and variance parameters. - Alireza Akhondi Asl; Arne Hans; Benoit Scherrer; Jurriaan M. Peters; Simon K. Warfield (ISBI, 2012)

Estimation of the Prior Distribution of Ground Truth in the STAPLE Algorithm: An Empirical Bayesian Approach. - Alireza Akhondi Asl; Simon K. Warfield (MICCAI (1), 2012)

Multi-atlas multi-shape segmentation of fetal brain MRI for volumetric and morphometric analysis of ventriculomegaly. - Ali Gholipour; Alireza Akhondi Asl; Judy A. Estroff; Simon K. Warfield (NeuroImage, 2012)

Estimating A Reference Standard Segmentation With Spatially Varying Performance Parameters: Local MAP STAPLE. - Olivier Commowick; Alireza Akhondi Asl; Simon K. Warfield (IEEE Trans. Medical Imaging, 2012)

Characterizing the DIstribution of Anisotropic MicrO-structural eNvironments with Diffusion-Weighted Imaging (DIAMOND). - Benoit Scherrer; Armin Schwartzman; Maxime Taquet; Sanjay P. Prabhu; Mustafa Sahin; Alireza Akhondi Asl; Simon K. Warfield (MICCAI (3), 2013)

Simultaneous Truth and Performance Level Estimation Through Fusion of Probabilistic Segmentations. - Alireza Akhondi Asl; Simon K. Warfield (IEEE Trans. Medical Imaging, 2013)

T 2-Relaxometry for Myelin Water Fraction Extraction Using Wald Distribution and Extended Phase Graph. - Alireza Akhondi Asl; Onur Afacan; Robert V. Mulkern; Simon K. Warfield (MICCAI (3), 2014)

Construction of a Deformable Spatiotemporal MRI Atlas of the Fetal Brain: Evaluation of Similarity Metrics and Deformation Models. - Ali Gholipour; Catherine Limperopoulos; Sean Clancy; Cédric Clouchoux; Alireza Akhondi Asl; Judy A. Estroff; Simon K. Warfield (MICCAI (2), 2014)

Optimal MAP Parameters Estimation in STAPLE - Learning from Performance Parameters versus Image Similarity Information. - Subrahmanyam Gorthi; Alireza Akhondi Asl; Jean-Philippe Thiran; Simon K. Warfield (MLMI, 2014)

Electrode localization for planning surgical resection of the epileptogenic zone in pediatric epilepsy. - Vahid Taimouri; Alireza Akhondi Asl; Xavier Tomas-Fernandez; Jurriaan M. Peters; Sanjay P. Prabhu; Annapurna Poduri; Masanori Takeoka; Tobias Loddenkemper; Ann Marie R. Bergin; Chellamani Harini; Joseph R. Madsen; Simon K. Warfield (Int. J. Comput. Assist. Radiol. Surg., 2014)

A Logarithmic Opinion Pool Based STAPLE Algorithm for the Fusion of Segmentations With Associated Reliability Weights. - Alireza Akhondi Asl; Lennox Hoyte; Mark E. Lockhart; Simon K. Warfield (IEEE Trans. Medical Imaging, 2014)

Optimal MAP Parameters Estimation in STAPLE Using Local Intensity Similarity Information. - Subrahmanyam Gorthi; Alireza Akhondi Asl; Simon K. Warfield (IEEE J. Biomed. Health Informatics, 2015)

Brain Effective Connectome based on fMRI and DTI Data: Bayesian Causal Learning and Assessment. - Abdolmahdi Bagheri; Mahdi Dehshiri; Yamin Bagheri; Alireza Akhondi Asl; Babak Nadjar Araabi (CoRR, 2023)

Bayesian Dynamic DAG Learning: Application in Discovering Dynamic Effective Connectome of Brain. - Abdolmahdi Bagheri; Mohammad Pasande; Kevin Bello; Alireza Akhondi Asl; Babak Nadjar Araabi (CoRR, 2023)

Algorithmic Identification of Essential Exogenous Nodes for Causal Sufficiency in Brain Networks. - Abdolmahdi Bagheri; Mahdi Dehshiri; Babak Nadjar Araabi; Alireza Akhondi Asl (CoRR, 2024)

C2P: Featuring Large Language Models with Causal Reasoning. - Abdolmahdi Bagheri; Matin Alinejad; Kevin Bello; Alireza Akhondi Asl (CoRR, 2024)

Discovering the effective connectome of the brain with dynamic Bayesian DAG learning. - Abdolmahdi Bagheri; Mohammad Pasande; Kevin Bello; Babak Nadjar Araabi; Alireza Akhondi Asl (NeuroImage, 2024)