Deriving stratified effects from joint models investigating gene-environment interactions. - Vincent Laville; Timothy Majarian; Paul S. de Vries; Amy R. Bentley; Mary F. Feitosa; Yun J. Sung; D. C. Rao; Alisa Manning; Hugues Aschard (BMC Bioinform., 2020)

GEM: scalable and flexible gene-environment interaction analysis in millions of samples. - Kenneth E. Westerman; Duy T. Pham; Liang Hong; Ye Chen; Magdalena Sevilla-González; Yun J. Sung; Yan V. Sun; Alanna C. Morrison; Han Chen; Alisa Manning (Bioinform., 2021)

STAAR workflow: a cloud-based workflow for scalable and reproducible rare variant analysis. - Sheila M. Gaynor; Kenneth E. Westerman; Lea L. Ackovic; Xihao Li; Zilin Li; Alisa Manning; Anthony A. Philippakis; Xihong Lin (Bioinform., 2022)

Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research. - Stan Ahalt; Paul Avillach; Rebecca R. Boyles; Kira Bradford; Steven Cox 001; Brandi Davis-Dusenbery; Robert L. Grossman; Ashok K. Krishnamurthy 001; Alisa Manning; Benedict Paten; Anthony Philippakis; Ingrid Borecki; et al. (J. Am. Medical Informatics Assoc., 2023)

Re-analysis and meta-analysis of summary statistics from gene-environment interaction studies. - Duy T. Pham; Kenneth E. Westerman; Cong Pan; Ling Chen; Shylaja Srinivasan; Elvira Isganaitis; Mary Ellen Vajravelu; Fida Bacha; Steve Chernausek; Rose Gubitosi-Klug; Jasmin Divers; Catherine Pihoker; et al. (Bioinform., 2023)

A statistical framework for multi-trait rare variant analysis in large-scale whole-genome sequencing studies. - Xihao Li; Han Chen; Margaret Sunitha Selvaraj; Eric Van Buren; Hufeng Zhou; Yuxuan Wang 008; Ryan Sun; Zachary R. McCaw; Zhi Yu; Min-Zhi Jiang; Daniel DiCorpo; Sheila M. Gaynor; et al. (Nat. Comput. Sci., 2025)