Metabolite fingerprinting: detecting biological features by independent component analysis. - Matthias Scholz; S. Gatzek; Alisdair R. Sterling; Oliver Fiehn; Joachim Selbig (Bioinform., 2004)

GMD@CSB.DB: the Golm Metabolome Database. - Joachim Kopka; Nicolas Schauer; Stephan Krueger; Claudia Birkemeyer; Björn Usadel; Eveline Bergmüller; Peter Dörmann; Wolfram Weckwerth; Yves Gibon; Mark Stitt; Lothar Willmitzer; Alisdair R. Fernie; et al. (Bioinform., 2005)

PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. - Björn Usadel; Axel Nagel; Dirk Steinhauser; Yves Gibon; Oliver E. Bläsing; Henning Redestig; Nese Sreenivasulu; Leonard Krall; Matthew A. Hannah; Fabien Poree; Alisdair R. Fernie; Mark Stitt (BMC Bioinform., 2006)

Metabolite profiles as a reflection of physiological status – a methodological validation. - Matthias Steinfath; Dirk Repsilber; Manuela Hische; Nicolas Schauer; Alisdair R. Fernie; Joachim Selbig (J. Integr. Bioinform., 2006)

Integrative Analysis of Transcriptome and Metabolome Data. - Lothar Willmitzer; Camila Caldana; Alisdair R. Fernie; Patrick Giavalisco; Matthew A. Hannah; Henning Redestig; Dirk Steinhauser (German Conference on Bioinformatics, 2007)

From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle. - Ralf Steuer; Adriano Nunes Nesi; Alisdair R. Fernie; Thilo Gross; Bernd Blasius; Joachim Selbig (Bioinform., 2007)

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics. - Marc Lohse; Anthony M. Bolger; Axel Nagel; Alisdair R. Fernie; John E. Lunn; Mark Stitt; Björn Usadel (Nucleic Acids Res., 2012)

Variability of Metabolite Levels Is Linked to Differential Metabolic Pathways in Arabidopsis's Responses to Abiotic Stresses. - Nadine Töpfer; Federico Scossa; Alisdair R. Fernie; Zoran Nikoloski (PLoS Comput. Biol., 2014)

iReMet-flux: constraint-based approach for integrating relative metabolite levels into a stoichiometric metabolic models. - Max Sajitz-Hermstein; Nadine Töpfer; Sabrina Kleessen; Alisdair R. Fernie; Zoran Nikoloski (Bioinform., 2016)

Multi-omics analysis of early leaf development in Arabidopsis thaliana. - Mohammad Amin Omidbakhshfard; Ewelina M. Sokolowska; Valerio Di Vittori; Leonardo Perez de Souza; Anastasiya Kuhalskaya; Yariv Brotman; Saleh Alseekh; Alisdair R. Fernie; Aleksandra Skirycz (Patterns, 2021)