Generation of Optimal Artificial Neural Networks Using a Pattern Search Algorithm: Application to Approximation of Chemical Systems. - Matthias Ihme; Alison L. Marsden; Heinz Pitsch (Neural Comput., 2008)

A method for stochastic constrained optimization using derivative-free surrogate pattern search and collocation. - Sethuraman Sankaran; Charles Audet; Alison L. Marsden (J. Comput. Phys., 2010)

Towards inverse modeling of turbidity currents: The inverse lock-exchange problem. - Lutz Lesshafft; Eckart Meiburg; Ben Kneller; Alison L. Marsden (Comput. Geosci., 2011)

Optimization of computationally expensive simulations with Gaussian processes and parameter uncertainty: Application to cardiovascular surgery. - Jing Xie 009; Peter I. Frazier; Sethuraman Sankaran; Alison L. Marsden; Saleh Elmohamed (Allerton Conference, 2012)

Immersive volume rendering of blood vessels. - Gregory Long; Han Suk Kim; Alison L. Marsden; Yuri Bazilevs; Jürgen P. Schulze (ERVR, 2012)

Toward a Computational Steering Framework for Large-Scale Composite Structures Based on Continually and Dynamically Injected Sensor Data. - Yuri Bazilevs; Alison L. Marsden; Francesco Lanza di Scalea; Amit Majumdar 001; Mahidhar Tatineni (ICCS, 2012)

Identification of Hemodynamically Optimal Coronary Stent Designs Based on Vessel Caliber. - Timothy J. Gundert; Alison L. Marsden; Weiguang Yang; David S. Marks; John F. LaDisa Jr. (IEEE Trans. Biomed. Eng., 2012)

Low entropy data mapping for sparse iterative linear solvers. - Mahdi Esmaily-Moghadam; Yuri Bazilevs; Alison L. Marsden (XSEDE, 2013)

A modular numerical method for implicit 0D/3D coupling in cardiovascular finite element simulations. - Mahdi Esmaily Moghadam; Irene E. Vignon-Clementel; Richard Figliola; Alison L. Marsden (J. Comput. Phys., 2013)

Creating shape templates for patient specific biventricular modeling in congenital heart disease. - Kathleen Gilbert; Genevieve Farrar; Brett R. Cowan; Avan Suinesiaputra; Christopher Occleshaw; Beau Pontre; James C. Perry; Sanjeet Hegde; Alison L. Marsden; Jeffrey H. Omens; Andrew D. McCulloch; Alistair A. Young (EMBC, 2015)

Structural Edge Detection for Cardiovascular Modeling. - Jameson Tyler Merkow; Zhuowen Tu; David J. Kriegman; Alison L. Marsden (MICCAI (3), 2015)

Dense Volume-to-Volume Vascular Boundary Detection. - Jameson Tyler Merkow; Alison L. Marsden; David J. Kriegman; Zhuowen Tu (MICCAI (3), 2016)

SimVascular as an instructional tool in the classroom. - Craig J. Goergen; Shawn C. Shadden; Alison L. Marsden (FIE, 2017)

A method to quantify mechanobiologic forces during zebrafish cardiac development using 4-D light sheet imaging and computational modeling. - Vijay Vedula; Juhyun Lee; Hao Xu; C.-C. Jay Kuo; Tzung K. Hsiai; Alison L. Marsden (PLoS Comput. Biol., 2017)

Using a Science Gateway to Deliver SimVascular Software as a Service for Classroom Instruction. - Nathan M. Wilson; Suresh Marru; Eroma Abeysinghe; Marcus A. Christie; Gabriel D. Maher; Adam R. Updegrove; Marlon E. Pierce; Alison L. Marsden (PEARC, 2018)

Correction: A method to quantify mechanobiologic forces during zebrafish cardiac development using 4-D light sheet imaging and computational modeling. - Vijay Vedula; Juhyun Lee; Hao Xu; C.-C. Jay Kuo; Tzung K. Hsiai; Alison L. Marsden (PLoS Comput. Biol., 2018)

The nested block preconditioning technique for the incompressible Navier-Stokes equations with emphasis on hemodynamic simulations. - Ju Liu; Weiguang Yang; Melody Dong; Alison L. Marsden (CoRR, 2019)

A robust and efficient iterative method for hyper-elastodynamics with nested block preconditioning. - Ju Liu; Alison L. Marsden (J. Comput. Phys., 2019)

Accelerating cardiovascular model building with convolutional neural networks. - Gabriel D. Maher; Nathan M. Wilson; Alison L. Marsden (Medical Biol. Eng. Comput., 2019)

A note on the accuracy of the generalized-α scheme for the incompressible Navier-Stokes equations. - Ju Liu; Ingrid S. Lan; Oguz Z. Tikenogullari; Alison L. Marsden (CoRR, 2020)

Fluid-structure interaction modeling of blood flow in the pulmonary arteries using the unified continuum and variational multiscale formulation. - Ju Liu; Weiguang Yang; Ingrid S. Lan; Alison L. Marsden (CoRR, 2020)

Geometric Uncertainty in Patient-Specific Cardiovascular Modeling with Convolutional Dropout Networks. - Gabriel D. Maher; Casey Fleeter; Daniele Schiavazzi; Alison L. Marsden (CoRR, 2020)

Model order reduction of flow based on a modular geometrical approximation of blood vessels. - Luca Pegolotti; Martin R. Pfaller; Alison L. Marsden; Simone Deparis (CoRR, 2020)

Quantitative Hemodynamics in Aortic Dissection: Comparing in Vitro MRI with FSI Simulation in a Compliant Model. - Judith Zimmermann; Kathrin Bäumler; Michael Loecher; Tyler E. Cork; Fikunwa O. Kolawole; Kyle Gifford; Alison L. Marsden; Dominik Fleischmann; Daniel B. Ennis (FIMH, 2021)

On the periodicity of cardiovascular fluid dynamics simulations. - Martin R. Pfaller; Jonathan Pham; Nathan M. Wilson; David W. Parker; Alison L. Marsden (CoRR, 2021)

Automated generation of 0D and 1D reduced-order models of patient-specific blood flow. - Martin R. Pfaller; Jonathan Pham; Aekaansh Verma; Nathan M. Wilson; David W. Parker; Weiguang Yang; Alison L. Marsden (CoRR, 2021)

Computational modeling of blood component transport related to coronary artery thrombosis in Kawasaki disease. - Noelia Grande Gutiérrez; Mark S. Alber; Andrew M. Kahn; Jane C. Burns; Mathew Mathew; Brian W. McCrindle; Alison L. Marsden (PLoS Comput. Biol., 2021)

SimVascular Gateway for Education and Research. - Justin Tran; Eroma Abeysinghe; John F. LaDisa Jr.; Alison L. Marsden; Marlon E. Pierce (PEARC, 2022)

svMorph: Interactive geometry-editing tools for virtual patient-specific vascular anatomies. - Jonathan Pham; Sofia Wyetzner; Martin R. Pfaller; David W. Parker; Doug L. James; Alison L. Marsden (CoRR, 2022)

svFSI: A Multiphysics Package for Integrated Cardiac Modeling. - Chi Zhu 002; Vijay Vedula; David W. Parker; Nathan M. Wilson; Shawn C. Shadden; Alison L. Marsden (J. Open Source Softw., 2022)

Hemodynamics in Patients with Aortic Coarctation: A Comparison of in vivo 4D-Flow MRI and FSI Simulation. - Priya J. Nair; Martin R. Pfaller; Seraina Anne Dual; Michael Loecher; Doff B. McElhinney; Daniel B. Ennis; Alison L. Marsden (FIMH, 2023)

Type and Shape Disentangled Generative Modeling for Congenital Heart Defects. - Fanwei Kong; Alison L. Marsden (STACOM@MICCAI, 2023)

A Fluid-Solid-Growth Solver for Cardiovascular Modeling. - Erica L. Schwarz; Martin R. Pfaller; Jason M. Szafron; Marcos Latorre; Stephanie E. Lindsey; Christopher K. Breuer; Jay D. Humphrey; Alison L. Marsden (CoRR, 2023)

Branched Latent Neural Operators. - Matteo Salvador; Alison Lesley Marsden (CoRR, 2023)

A Modular Framework for Implicit 3D-0D Coupling in Cardiac Mechanics. - Aaron L. Brown; Matteo Salvador; Lei Shi; Martin R. Pfaller; Zinan Hu; Kaitlin E. Harold; Tzung K. Hsiai; Vijay Vedula; Alison L. Marsden (CoRR, 2023)

A Probabilistic Neural Twin for Treatment Planning in Peripheral Pulmonary Artery Stenosis. - John D. Lee; Jakob Richter; Martin R. Pfaller; Jason M. Szafron; Karthik Menon; Andrea Zanoni; Michael R. Ma; Jeffrey A. Feinstein; Jacqueline Kreutzer; Alison L. Marsden; Daniele E. Schiavazzi (CoRR, 2023)

A Novel LSTM and Graph Neural Networks Approach for Cardiovascular Simulations. - Angelica Iacovelli; Luca Pegolotti; Matteo Salvador; Edoardo Stoppa; Marco D. Santambrogio; Alison L. Marsden (BHI, 2024)

FSGe: A fast and strongly-coupled 3D fluid-solid-growth interaction method. - Martin R. Pfaller; Marcos Latorre; Erica L. Schwarz; Fannie M. Gerosa; Jason M. Szafron; Jay D. Humphrey; Alison L. Marsden (CoRR, 2024)

Bayesian Windkessel calibration using optimized 0D surrogate models. - Jakob Richter; Jonas Nitzler; Luca Pegolotti; Karthik Menon; Jonas Biehler; Wolfgang A. Wall; Daniele E. Schiavazzi; Alison L. Marsden; Martin R. Pfaller (CoRR, 2024)

NeurAM: nonlinear dimensionality reduction for uncertainty quantification through neural active manifolds. - Andrea Zanoni; Gianluca Geraci; Matteo Salvador; Alison L. Marsden; Daniele E. Schiavazzi (CoRR, 2024)

Liquid Fourier Latent Dynamics Networks for fast GPU-based numerical simulations in computational cardiology. - Matteo Salvador; Alison L. Marsden (CoRR, 2024)

Bayesian inference of mean velocity fields and turbulence models from flow MRI. - Alexandros Kontogiannis; Priya J. Nair; Michael Loecher; Daniel B. Ennis; Alison L. Marsden; Matthew P. Juniper (CoRR, 2024)

SDF4CHD: Generative modeling of cardiac anatomies with congenital heart defects. - Fanwei Kong; Sascha Stocker; Perry S. Choi; Michael R. Ma; Daniel B. Ennis; Alison L. Marsden (Medical Image Anal., 2024)

Learning reduced-order models for cardiovascular simulations with graph neural networks. - Luca Pegolotti; Martin R. Pfaller; Natalia L. Rubio; Ke Ding; Rita Brugarolas Brufau; Eric Darve; Alison L. Marsden (Comput. Biol. Medicine, 2024)

Virtual Shape-Editing of Patient-Specific Vascular Models Using Regularized Kelvinlets. - Jonathan Pham; Fanwei Kong; Doug L. James; Alison L. Marsden (IEEE Trans. Biomed. Eng., 2024)

Quantification and Visualization of CT Myocardial Perfusion Imaging to Detect Ischemia-Causing Coronary Arteries. - Muhammad Owais Khan; Anahita Abbasnejad Seresti; Karthik Menon; Alison L. Marsden; Koen Nieman (IEEE Trans. Medical Imaging, 2024)

Hybrid physics-based and data-driven modeling of vascular bifurcation pressure differences. - Natalia L. Rubio; Luca Pegolotti; Martin R. Pfaller; Eric F. Darve; Alison L. Marsden (Comput. Biol. Medicine, 2025)

Personalized and uncertainty-aware coronary hemodynamics simulations: From Bayesian estimation to improved multi-fidelity uncertainty quantification. - Karthik Menon; Andrea Zanoni; Muhammad Owais Khan; Gianluca Geraci; Koen Nieman; Daniele E. Schiavazzi; Alison L. Marsden (Comput. Methods Programs Biomed., 2025)

Validation of CTA-based closed-loop coronary artery flow simulations against intravascular Doppler velocity and pressure measurements. - Anahita Abbasnejad Seresti; Alison L. Marsden; Andrew M. Kahn; Ryan R. Reeves; Ehtisham Mahmud; Belal Al Khiami; Lawrence Ang; Muhammad Owais Khan (Comput. Methods Programs Biomed., 2025)

Assessment of Aortic Dissection Remodeling With Patient-Specific Fluid-Structure Interaction Models. - Kathrin Bäumler; Malte Rolf-Pissarczyk; Richard Schussnig; Thomas-Peter Fries; Gabriel Mistelbauer; Martin R. Pfaller; Alison L. Marsden; Dominik Fleischmann; Gerhard A. Holzapfel (IEEE Trans. Biomed. Eng., 2025)

Full-field surrogate modeling of cardiac function encoding geometric variability. - Elena Martinez; Beatrice Moscoloni; Matteo Salvador; Fanwei Kong; Mathias Peirlinck; Alison Lesley Marsden (CoRR, 2025)

Deformable registration and generative modelling of aortic anatomies by auto-decoders and neural ODEs. - Riccardo Tenderini; Luca Pegolotti; Fanwei Kong; Stefano Pagani; Francesco Regazzoni 002; Alison L. Marsden; Simone Deparis (CoRR, 2025)

Optimal patient allocation for echocardiographic assessments. - Bozhi Sun; Seda Tierney; Jeffrey A. Feinstein; Frederick Damen; Alison L. Marsden; Daniele E. Schiavazzi (CoRR, 2025)

On the performance of multi-fidelity and reduced-dimensional neural emulators for inference of physiologic boundary conditions. - Chloe H. Choi; Andrea Zanoni; Daniele E. Schiavazzi; Alison L. Marsden (CoRR, 2025)

svZeroDSolver: A modular package for lumped-parameter cardiovascular simulations. - Karthik Menon; Jakob Richter; Martin R. Pfaller; Jonathan Pham; Emilin M. Mathew; Kaitlin E. Harold; Nicholas C. Dorn; Aekaansh Verma; Alison L. Marsden (J. Open Source Softw., 2025)