An integrative analysis of gene expression and molecular interaction data to identify dys-regulated sub-networks in inflammatory bowel disease. - Daniele Muraro; Alison Simmons (BMC Bioinform., 2016)

Embedded EthiCS: Integrating Ethics Broadly Across Computer Science Education. - Barbara J. Grosz; David Gray Grant; Kate Vredenburgh; Jeff Behrends; Lily Hu; Alison Simmons; Jim Waldo (CoRR, 2018)

Embedded EthiCS: integrating ethics across CS education. - Barbara J. Grosz; David Gray Grant; Kate Vredenburgh; Jeff Behrends; Lily Hu; Alison Simmons; Jim Waldo (Commun. ACM, 2019)

Colonic epithelial cell diversity in health and inflammatory bowel disease. - Kaushal Parikh; Agne Antanaviciute; David Fawkner-Corbett; Marta Jagielowicz; Anna Aulicino; Christoffer Lagerholm; Simon Davis; James Kinchen; Hannah H. Chen 001; Nasullah Khalid Alham; Neil Ashley; Errin Johnson; et al. (Nat., 2019)

Evaluating performance of existing computational models in predicting CD8+ T cell pathogenic epitopes and cancer neoantigens. - Paul R. Buckley; Chloe H. Lee; Ruichong Ma; Isaac Woodhouse; Jeongmin Woo; Vasily Tsvetkov; Dmitrii S. Shcherbinin; Agne Antanaviciute; Mikhail Shughay; Margarida Rei; Alison Simmons; Hashem Koohy (Briefings Bioinform., 2022)