Best Match Graphs and Reconciliation of Gene Trees with Species Trees. - Manuela Geiß; Marcos González; Alitzel López Sánchez; Dulce I. Valdivia; Marc Hellmuth; Maribel Hernández-Rosales; Peter F. Stadler (CoRR, 2019)

From pairs of most similar sequences to phylogenetic best matches. - Peter F. Stadler; Manuela Geiß; David Schaller 001; Alitzel López Sánchez; Marcos E. González Laffitte; Dulce I. Valdivia; Marc Hellmuth; Maribel Hernandez-Rosales (Algorithms Mol. Biol., 2020)

Colorful orthology clustering in bounded-degree similarity graphs. - Alitzel López Sánchez; Manuel Lafond (J. Bioinform. Comput. Biol., 2021)

REvolutionH-tl: Reconstruction of Evolutionary Histories tool. - José Antonio Ramírez-Rafael; Annachiara Korchmaros; Katia Aviña-Padilla; Alitzel López Sánchez; Andrea Arlette España-Tinajero; Marc Hellmuth; Peter F. Stadler; Maribel Hernández-Rosales (RECOMB-CG, 2024)

Galled Perfect Transfer Networks. - Alitzel López Sánchez; Manuel Lafond (RECOMB-CG, 2024)

The Path-Label Reconciliation (PLR) Dissimilarity Measure for Gene Trees. - Alitzel López Sánchez; José Antonio Ramírez-Rafael; Alejandro Flores-Lamas; Maribel Hernández-Rosales; Manuel Lafond (WABI, 2024)

Predicting horizontal gene transfers with perfect transfer networks. - Alitzel López Sánchez; Manuel Lafond (Algorithms Mol. Biol., 2024)

Cluster Editing on Cographs and Related Classes. - Manuel Lafond; Alitzel López Sánchez; Weidong Luo (STACS, 2025)