MetaQUAST: evaluation of metagenome assemblies. - Alla Mikheenko; Vladislav Saveliev; Alexey A. Gurevich (Bioinform., 2016)

Icarus: visualizer for de novo assembly evaluation. - Alla Mikheenko; Gleb Valin; Andrey D. Prjibelski; Vladislav Saveliev; Alexey A. Gurevich (Bioinform., 2016)

Versatile genome assembly evaluation with QUAST-LG. - Alla Mikheenko; Andrey D. Prjibelski; Vladislav Saveliev; Dmitry Antipov; Alexey A. Gurevich (Bioinform., 2018)

Assembly Graph Browser: interactive visualization of assembly graphs. - Alla Mikheenko; Mikhail Kolmogorov (Bioinform., 2019)

TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats. - Alla Mikheenko; Andrey V. Bzikadze; Alexey A. Gurevich; Karen H. Miga; Pavel A. Pevzner (Bioinform., 2020)

Extending rnaSPAdes functionality for hybrid transcriptome assembly. - Andrey D. Prjibelski; Giuseppe D. Puglia; Dmitry Antipov; Elena Bushmanova; Daniela Giordano; Alla Mikheenko; Domenico Vitale; Alla L. Lapidus (BMC Bioinform., 2020)

WebQUAST: online evaluation of genome assemblies. - Alla Mikheenko; Vladislav Saveliev; Pascal Hirsch; Alexey A. Gurevich (Nucleic Acids Res., 2023)