The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. - Eva Huala; Allan Dickerman; Margarita Garcia-Hernandez; Danforth Weems; Leonore Reiser; Frank LaFond; David Hanley; Donald Kiphart; Mingzhe Zhuang; Wen Huang; Lukas A. Mueller; Debika Bhattacharyya; et al. (Nucleic Acids Res., 2001)

A Bioinformatics Platform for Studying Metabolic Functions of Unculturable Microbes. - Allan Dickerman; Brett Tyler (DG.O, 2002)

A Run-Time Reconfigurable System for Gene-Sequence Searching. - Kiran Puttegowda; William Worek; Nicholas Pappas; Anusha Dandapani; Peter Athanas; Allan Dickerman (VLSI Design, 2003)

The Arabidopsis SeedGenes Project. - Iris Tzafrir; Allan Dickerman; Olga Brazhnik; Quoc Nguyen; John McElver; Catherine Frye; David Patton; David Meinke (Nucleic Acids Res., 2003)

PIML: the Pathogen Information Markup Language. - Yongqun He; Richard R. Vines; Alice R. Wattam; Georgiy V. Abramochkin; Allan Dickerman; J. Dana Eckart; Bruno W. S. Sobral (Bioinform., 2005)

PATRIC: The VBI PathoSystems Resource Integration Center. - E. E. Snyder; N. Kampanya; J. Lu; Eric K. Nordberg; H. R. Karur; Maulik Shukla; Jeetendra Soneja; Y. Tian; Tian Xue; Hyun Seung Yoo; Fengkai Zhang; C. Dharmanolla; et al. (Nucleic Acids Res., 2007)

The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities. - James J. Davis 002; Alice R. Wattam; Ramy K. Aziz; Thomas S. Brettin; Ralph Butler; Rory Butler; Philippe Chlenski; Neal Conrad; Allan Dickerman; Emily M. Dietrich; Joseph L. Gabbard; Svetlana Gerdes; et al. (Nucleic Acids Res., 2020)

Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR. - Robert D. Olson; Rida Assaf; Thomas S. Brettin; Neal Conrad; Clark Cucinell; James J. Davis 002; Donald M. Dempsey; Allan Dickerman; Emily M. Dietrich; Ronald W. Kenyon; Mehmet Kuscuoglu; Elliot J. Lefkowitz; et al. (Nucleic Acids Res., 2023)