Weakly Supervised Learning of Single-Cell Feature Embeddings. - Juan C. Caicedo; Claire McQuin; Allen Goodman; Shantanu Singh; Anne E. Carpenter (CVPR, 2018)

Applying Faster R-CNN for Object Detection on Malaria Images. - Jane Hung; Allen Goodman; Stefanie Lopes; Gabriel Rangel; Deepali Ravel; Fabio T. M. Costa; Manoj Duraisingh; Matthias Marti; Anne E. Carpenter (CoRR, 2018)

DoGNet: A deep architecture for synapse detection in multiplexed fluorescence images. - Victor Kulikov; Syuan-Ming Guo; Matthew Stone; Allen Goodman; Anne E. Carpenter; Mark Bathe; Victor S. Lempitsky (PLoS Comput. Biol., 2019)

Poster: Can a Mobile Application Aid in the Effectiveness of Skilled Nursing-Facility Communication Systems? - Ivy Shi; Allen Goodman (CHASE, 2020)

Keras R-CNN: library for cell detection in biological images using deep neural networks. - Jane Hung; Allen Goodman; Deepali Ravel; Stefanie Lopes; Gabriel Rangel; Odailton A. Nery; Benoit Malleret; Francois Nosten; Marcus V. G. Lacerda; Marcelo U. Ferreira; Laurent Rénia; Manoj Duraisingh; et al. (BMC Bioinform., 2020)

CellProfiler 4: improvements in speed, utility and usability. - David R. Stirling; Madison J. Swain-Bowden; Alice M. Lucas; Anne E. Carpenter; Beth A. Cimini; Allen Goodman (BMC Bioinform., 2021)

Concept Bottleneck Language Models For protein design. - Aya Abdelsalam Ismail; Tuomas P. Oikarinen; Amy Wang; Julius Adebayo; Samuel Stanton; Taylor Joren; Joseph Kleinhenz; Allen Goodman; Héctor Corrada Bravo; Kyunghyun Cho; Nathan C. Frey (CoRR, 2024)