Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine. - Qiang Gu; Anup Kumar; Simon Bray; Allison L. Creason; Alireza Khanteymoori; Vahid Jalili; Björn A. Grüning; Jeremy Goecks (PLoS Comput. Biol., 2021)

COEXIST: Coordinated single-cell integration of serial multiplexed tissue images. - Robert T. Heussner; Cameron F. Watson; Christopher Z. Eddy; Kunlun Wang; Eric M. Cramer; Allison L. Creason; Gordon B. Mills; Young Hwan Chang (PLoS Comput. Biol., 2025)