Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models. - Allyson L. Lister; Matthew R. Pocock; Anil Wipat (J. Integr. Bioinform., 2007)

The OWL of Biomedical Investigations. - Mélanie Courtot; William J. Bug; Frank Gibson; Allyson L. Lister; James Malone; Daniel Schober; Ryan Remy Brinkman; Alan Ruttenberg (OWLED, 2008)

Saint: a lightweight integration environment for model annotation. - Allyson L. Lister; Matthew R. Pocock; Morgan L. Taschuk; Anil Wipat (Bioinform., 2009)

Managing Experimental Data Using FuGE. - Andrew R. Jones; Allyson L. Lister (Proteome Bioinformatics, 2010)

Annotation of SBML models through rule-based semantic integration. - Allyson L. Lister; Phillip W. Lord; Matthew R. Pocock; Anil Wipat (J. Biomed. Semant., 2010)

Live Coverage of Intelligent Systems for Molecular Biology/European Conference on Computational Biology (ISMB/ECCB) 2009. - Allyson L. Lister; Ruchira S. Datta; Oliver Hofmann 001; Roland Krause; Michael Kuhn 004; Bettina Roth; Reinhard Schneider 002 (PLoS Comput. Biol., 2010)

Live Coverage of Scientific Conferences Using Web Technologies. - Allyson L. Lister; Ruchira S. Datta; Oliver Hofmann 001; Roland Krause; Michael Kuhn 004; Bettina Roth; Reinhard Schneider 002 (PLoS Comput. Biol., 2010)

MIREOT: The minimum information to reference an external ontology term. - Mélanie Courtot; Frank Gibson; Allyson L. Lister; James Malone; Daniel Schober; Ryan Remy Brinkman; Alan Ruttenberg (Appl. Ontology, 2011)

The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation. - James Malone; Andy Brown; Allyson L. Lister; Jon C. Ison; Duncan Hull; Helen E. Parkinson; Robert Stevens 001 (J. Biomed. Semant., 2014)

BioSharing: curated and crowd-sourced metadata standards, databases and data policies in the life sciences. - Peter McQuilton; Alejandra N. González-Beltrán; Philippe Rocca-Serra; Milo Thurston; Allyson L. Lister; Eamonn Maguire; Susanna-Assunta Sansone (Database J. Biol. Databases Curation, 2016)

Mapping Subjects and Domains across the Humanities and Natural Sciences in FAIRsharing. - Allyson L. Lister; Peter McQuilton; Milo Thurston; Susanna-Assunta Sansone (SWAT4HCLS, 2019)

Helping the Consumers and Producers of Standards, Repositories and Policies to Enable FAIR Data. - Peter McQuilton; Dominique Batista; Oya Beyan; Ramón Granell; Simon J. Coles; Massimiliano Izzo; Allyson L. Lister; Robert Pergl; Philippe Rocca-Serra; Ben Schaap; Hugh P. Shanahan; Milo Thurston; et al. (Data Intell., 2020)

Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness. - Romain David 001; Audrey S. Richard; Claire Connellan; Katharina B. Lauer; Maria Luisa Chiusano; Carole A. Goble; Martin Houde; Isabel Kemmer; Antje Keppler; Philippe Lieutaud; Christian Ohmann; Maria Panagiotopoulou; et al. (Data Sci. J., 2023)