NPEST: a nonparametric method and a database for transcription start site prediction. - Tatiana V. Tatarinova; Alona Kryshchenko; Martin Triska; Mehedi Hassan; Denis J. Murphy; Michael Neely; Alan Schumitzky (Quant. Biol., 2013)

COVID-19 Literature Topic-Based Search via Hierarchical NMF. - Rachel Grotheer; Longxiu Huang; Yihuan Huang; Alona Kryshchenko; Oleksandr Kryshchenko; Pengyu Li; Xia Li; Elizaveta Rebrova; Kyung Ha; Deanna Needell (NLP4COVID@EMNLP, 2020)

On Nonnegative CP Tensor Decomposition Robustness to Noise. - Jamie Haddock; Lara Kassab; Alona Kryshchenko; Deanna Needell (ITA, 2020)

On Large-Scale Dynamic Topic Modeling with Nonnegative CP Tensor Decomposition. - Miju Ahn; Nicole Eikmeier; Jamie Haddock; Lara Kassab; Alona Kryshchenko; Kathryn Leonard; Deanna Needell; R. W. M. A. Madushani; Elena Sizikova; Chuntian Wang (CoRR, 2020)

On Nonnegative Matrix and Tensor Decompositions for COVID-19 Twitter Dynamics. - Lara Kassab; Alona Kryshchenko; Hanbaek Lyu; Denali Molitor; Deanna Needell; Elizaveta Rebrova (CoRR, 2020)

Semi-supervised NMF Models for Topic Modeling in Learning Tasks. - Jamie Haddock; Lara Kassab; Sixian Li; Alona Kryshchenko; Rachel Grotheer; Elena Sizikova; Chuntian Wang; Thomas Merkh; R. W. M. A. Madushani; Miju Ahn; Deanna Needell; Kathryn Leonard (CoRR, 2020)

Semi-supervised Nonnegative Matrix Factorization for Document Classification. - Jamie Haddock; Lara Kassab; Sixian Li; Alona Kryshchenko; Rachel Grotheer; Elena Sizikova; Chuntian Wang; Thomas Merkh; R. W. M. A. Madushani; Miju Ahn; Deanna Needell; Kathryn Leonard (ACSCC, 2021)

Automatic Infectious Disease Classification Analysis with Concept Discovery. - Elena Sizikova; Joshua Vendrow; Xu Cao; Rachel Grotheer; Jamie Haddock; Lara Kassab; Alona Kryshchenko; Thomas Merkh; R. W. M. A. Madushani; Kenny Moise; Annie Ulichney; Huy V. Vo; et al. (CoRR, 2022)

Randomized Kaczmarz methods for t-product tensor linear systems with factorized operators. - Alejandra Castillo; Jamie Haddock; Iryna Hartsock; Paulina Hoyos; Lara Kassab; Alona Kryshchenko; Kamila Larripa; Deanna Needell; Shambhavi Suryanarayanan; Karamatou Yacoubou Djima (CoRR, 2024)

Sparseness-constrained nonnegative tensor factorization for detecting topics at different time scales. - Lara Kassab; Alona Kryshchenko; Hanbaek Lyu; Denali Molitor; Deanna Needell; Elizaveta Rebrova; Jiahong Yuan (Frontiers Appl. Math. Stat., 2024)

A non-parametric optimal design algorithm for population pharmacokinetics. - Markus Hovd; Alona Kryshchenko; Michael Neely; Julian Otalvaro; Alan Schumitzky; Walter M. Yamada (CoRR, 2025)

Quantile-Based Randomized Kaczmarz for Corrupted Tensor Linear Systems. - Alejandra Castillo; Jamie Haddock; Iryna Hartsock; Paulina Hoyos; Lara Kassab; Alona Kryshchenko; Kamila Larripa; Deanna Needell; Shambhavi Suryanarayanan; Karamatou Yacoubou Djima (CoRR, 2025)

Block Gauss-Seidel methods for t-product tensor regression. - Alejandra Castillo; Jamie Haddock; Iryna Hartsock; Paulina Hoyos; Lara Kassab; Alona Kryshchenko; Kamila Larripa; Deanna Needell; Shambhavi Suryanarayanan; Karamatou Yacoubou Djima (CoRR, 2025)