Basis Pursuit Based Algorithm for Intra-Voxel Recovering Information in DW-MRI.. - Alonso Ramirez-Manzanares; Mariano Rivera (ENC, 2005)

Basis Tensor Decomposition for Restoring Intra-Voxel Structure and Stochastic Walks for Inferring Brain Connectivity in DT-MRI. - Alonso Ramirez-Manzanares; Mariano Rivera (Int. J. Comput. Vis., 2006)

A Variational Approach for Multi-valued Velocity Field Estimation in Transparent Sequences. - Alonso Ramirez-Manzanares; Mariano Rivera; Pierre Kornprobst; François Lauze (SSVM, 2007)

Diffusion Basis Functions Decomposition for Estimating White Matter Intravoxel Fiber Geometry. - Alonso Ramirez-Manzanares; Mariano Rivera; Baba C. Vemuri; Paul R. Carney; Thomas H. Mareci (IEEE Trans. Medical Imaging, 2007)

Robust regularization for the estimation of intra-voxel axon fiber orientations. - Alonso Ramirez-Manzanares; Hui Zhang 005; Mariano Rivera; James C. Gee (CVPR Workshops, 2008)

A Comparison of Methods for Recovering Intra-voxel White Matter Fiber Architecture from Clinical Diffusion Imaging Scans. - Alonso Ramirez-Manzanares; Philip A. Cook; James C. Gee (MICCAI (1), 2008)

Denoising Intra-voxel Axon Fiber Orientations by Means of ECQMMF Method. - Alonso Ramirez-Manzanares; Mariano Rivera; James C. Gee (MICAI, 2009)

Massive Particles for Brain Tractography. - Ramón Aranda; Mariano Rivera; Alonso Ramirez-Manzanares; Manzar Ashtari; James C. Gee (MICAI (1), 2010)

Robust Spatial Regularization and Velocity Layer Separation for Optical Flow Computation on Transparent Sequences. - Alonso Ramirez-Manzanares; Abel Palafox-Gonzalez; Mariano Rivera (MICAI (1), 2010)

Improved Diffusion Basis Functions Fitting and Metric Distance for Brain Axon Fiber Estimation. - Ramón Aranda; Mariano Rivera; Alonso Ramirez-Manzanares (PSIVT (2), 2011)

Variational Multi-Valued Velocity Field Estimation for Transparent Sequences. - Alonso Ramirez-Manzanares; Mariano Rivera; Pierre Kornprobst; François Lauze (J. Math. Imaging Vis., 2011)

Quantitative evaluation of 10 tractography algorithms on a realistic diffusion MR phantom. - Pierre Fillard; Maxime Descoteaux; Alvina Goh; Sylvain Gouttard; Ben Jeurissen; James Malcolm; Alonso Ramirez-Manzanares; Marco Reisert; Ken E. Sakaie; Fatima Tensaouti; Ting Yo; Jean-François Mangin; et al. (NeuroImage, 2011)

Spatial Sampling for Image Segmentation. - Mariano Rivera; Oscar Dalmau Cedeño; Washington Mio; Alonso Ramirez-Manzanares (Comput. J., 2012)

Self-oriented Diffusion Basis Functions for white matter structure estimation. - Ramón Aranda; Mariano Rivera; Alonso Ramirez-Manzanares (ISBI, 2013)

A flocking based method for brain tractography. - Ramón Aranda; Mariano Rivera; Alonso Ramirez-Manzanares (Medical Image Anal., 2014)

Quantitative Comparison of Reconstruction Methods for Intra-Voxel Fiber Recovery From Diffusion MRI. - Alessandro Daducci; Erick Jorge Canales-Rodríguez; Maxime Descoteaux; Eleftherios Garyfallidis; Yaniv Gur; Ying-Chia Lin; Merry Mani; Sylvain Merlet; Michael Paquette; Alonso Ramirez-Manzanares; Marco Reisert; Paulo Reis Rodrigues; et al. (IEEE Trans. Medical Imaging, 2014)

A hierarchical algorithm for molecular similarity (H-FORMS). - Alonso Ramirez-Manzanares; Joaquín Peña; Jon M. Azpiroz; Gabriel Merino (J. Comput. Chem., 2015)

Sparse and Adaptive Diffusion Dictionary (SADD) for recovering intra-voxel white matter structure. - Ramón Aranda; Alonso Ramirez-Manzanares; Mariano Rivera (Medical Image Anal., 2015)

Estimation of individual axon bundle properties by a Multi-Resolution Discrete-Search method. - Ricardo Coronado-Leija; Alonso Ramirez-Manzanares; José L. Marroquín (Medical Image Anal., 2017)

Cuda Parallelization of Commit Framework for Efficient Microstructure-Informed Tractography. - Erick Hernandez-Gutierrez; Alonso Ramirez-Manzanares; José L. Marroquín; Mario Ocampo-Pineda; Alessandro Daducci (ISBI, 2019)

A GPU implementation of the Discontinuous Galerkin method for simulation of diffusion in brain tissue. - Daniel Cervantes; Miguel Angel Moreles; Joaquín Peña; Alonso Ramirez-Manzanares (CoRR, 2019)

Histological validation of per-bundle water diffusion metrics within a region of fiber crossing following axonal degeneration. - Gilberto Rojas-Vite; Ricardo Coronado-Leija; Omar Narvaez-Delgado; Alonso Ramirez-Manzanares; José L. Marroquín; Ramsés Noguez-Imm; Marcos L. Aranda; Benoit Scherrer; Jorge Larriva-Sahd; Luis Concha (NeuroImage, 2019)

A community-based topological distance for brain-connectome classification. - Juan Luis Villarreal-Haro; Alonso Ramirez-Manzanares; Juan Antonio Pichardo-Corpus (J. Complex Networks, 2020)

A Novel Metric Shows the Robustness of the Graph Communities to Brain-Tractography False-Positives. - Juan Luis Villarreal-Haro; Alonso Ramirez-Manzanares; Juan Antonio Pichardo-Corpus (CoRR, 2020)

Robust Monte-Carlo Simulations in Diffusion-MRI: Effect of the Substrate Complexity and Parameter Choice on the Reproducibility of Results. - Jonathan Rafael-Patino; David Romascano; Alonso Ramirez-Manzanares; Erick Jorge Canales-Rodríguez; Gabriel Girard; Jean-Philippe Thiran (Frontiers Neuroinformatics, 2020)

Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset? - Kurt G. Schilling; François Rheault; Laurent Petit; Colin B. Hansen; Vishwesh Nath; Fang-Cheng Yeh; Gabriel Girard; Muhamed Barakovic; Jonathan Rafael-Patino; Thomas Yu; Elda Fischi Gomez; Marco Pizzolato; et al. (NeuroImage, 2021)

Improving Multi-Tensor Fitting with Global Information from Track Orientation Density Imaging. - Erick Hernandez-Gutierrez; Ricardo Coronado-Leija; Alonso Ramirez-Manzanares; Muhamed Barakovic; Stefano Magon; Maxime Descoteaux (CDMRI@MICCAI, 2023)

Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge. - Gabriel Girard; Jonathan Rafael-Patino; Raphaël Truffet; Dogu Baran Aydogan; Nagesh Adluru; Veena A. Nair; Vivek Prabhakaran; Barbara B. Bendlin; Andrew L. Alexander; Sara Bosticardo; Ilaria Gabusi; Mario Ocampo-Pineda; et al. (NeuroImage, 2023)

In-Silico Trained AI for Enhanced T2 Spectrum Imaging and Myelin Water Fraction Mapping in Preclinical 7T MRI. - Daniel Vallejo-Aldana; Alonso Ramirez-Manzanares; Erick Jorge Canales-Rodríguez; Thomas Yu; Abraham Cisneros-Mejorado; Luis Concha; Jonathan Rafael-Patino; Jean-Philippe Thiran (ISBI, 2024)