ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature. - Alperen Dalkiran; Ahmet Süreyya Rifaioglu; Maria Jesus Martin; Rengül Çetin-Atalay; Volkan Atalay; Tunca Dogan (BMC Bioinform., 2018)

Transfer learning for drug-target interaction prediction. - Alperen Dalkiran; Ahmet Atakan; Ahmet Süreyya Rifaioglu; Maria Jesus Martin; Rengül Çetin-Atalay; Aybar C. Acar; Tunca Dogan; Volkan Atalay (Bioinform., 2023)