Mathematical modeling of the dynamic storage of iron in ferritin. - J. Cristian Salgado; Alvaro Olivera-Nappa; Ziomara P. Gerdtzen; Victoria Tapia; Elizabeth C. Theil; Carlos Conca; Marco T. Nuñez (BMC Syst. Biol., 2010)

Mutagenesis Objective Search and Selection Tool (MOSST): an algorithm to predict structure-function related mutations in proteins. - Alvaro Olivera-Nappa; Barbara A. Andrews; Juan A. Asenjo (BMC Bioinform., 2011)

Pattern recognition on antigen-antibody interactions from protein microarrays based on data mining and bioinformatics analysis. - Jorge Torres-Almonacid; David Medina-Ortiz; Diego Álvarez-Saravia; Julio Águila-Guerrero; Alvaro Olivera-Nappa; Marcelo A. Navarrete (SCCC, 2019)

Cell cycle and protein complex dynamics in discovering signaling pathways. - Daniel Inostroza; Cecilia Hernández; Diego Seco; Gonzalo Navarro 001; Alvaro Olivera-Nappa (J. Bioinform. Comput. Biol., 2019)

Combination of digital signal processing and assembled predictive models facilitates the rational design of proteins. - David Medina-Ortiz; Sebastián Contreras; Juan Amado-Hinojosa; Jorge Torres-Almonacid; Juan A. Asenjo; Marcelo A. Navarrete; Alvaro Olivera-Nappa (CoRR, 2020)

DMAKit: A user-friendly web platform for bringing state-of-the-art data analysis techniques to non-specific users. - David Medina-Ortiz; Sebastián Contreras; Cristofer Quiroz; Juan A. Asenjo; Alvaro Olivera-Nappa (Inf. Syst., 2020)

Peptipedia: a user-friendly web application and a comprehensive database for peptide research supported by Machine Learning approach. - Cristofer Quiroz; Yasna Barrera Saavedra; Benjamín Armijo-Galdames; Juan Amado-Hinojosa; Alvaro Olivera-Nappa; Anamaria Sanchez-Daza; David Medina-Ortiz (Database J. Biol. Databases Curation, 2021)

BEST: a Shiny/R web-based application to easily retrieve cross-related enzyme functional parameters and information from BRENDA. - Juan Saez Hidalgo; Karen Y. Oróstica; Anamaria Sanchez-Daza; Alvaro Olivera-Nappa (Bioinform., 2021)

Peptipedia: a comprehensive database for peptide research supported by Assembled predictive models and Data Mining approaches. - Cristofer Quiroz; Yasna Barrera Saavedra; Benjamín Armijo-Galdames; Juan Amado-Hinojosa; Alvaro Olivera-Nappa; Anamaria Sanchez-Daza; David Medina-Ortiz (CoRR, 2021)

Relaxing restrictions at the pace of vaccination increases freedom and guards against further COVID-19 waves. - Simon Bauer; Sebastián Contreras; Jonas Dehning; Matthias Linden; Emil Iftekhar; Sebastian B. Mohr; Alvaro Olivera-Nappa; Viola Priesemann (PLoS Comput. Biol., 2021)

Exploring Machine Learning Algorithms and Numerical Representations Strategies to Develop Sequence-Based Predictive Models for Protein Networks. - David Medina-Ortiz; Pedro Salinas; Gabriel Cabas-Mora; Fabio Durán-Verdugo; Alvaro Olivera-Nappa; Roberto Uribe Paredes (ICCSA (1), 2023)

Exploring Machine Learning Algorithms and Protein Language Models Strategies to Develop Enzyme Classification Systems. - Diego Fernández; Alvaro Olivera-Nappa; Roberto Uribe Paredes; David Medina-Ortiz (IWBBIO (1), 2023)

Peptide-based drug discovery through artificial intelligence: towards an autonomous design of therapeutic peptides. - Montserrat Goles; Anamaria Sanchez-Daza; Gabriel Cabas-Mora; Lindybeth Sarmiento-Varón; Julieta Sepúlveda-Yañez; Hoda Anvari-Kazemabad; Mehdi D. Davari; Roberto Uribe Paredes; Alvaro Olivera-Nappa; Marcelo A. Navarrete; David Medina-Ortiz (Briefings Bioinform., 2024)

Peptipedia v2.0: a peptide sequence database and user-friendly web platform. A major update. - Gabriel Cabas-Mora; Anamaria Sanchez-Daza; Nicole Soto-García; Valentina Garrido; Diego Álvarez-Saravia; Marcelo A. Navarrete; Lindybeth Sarmiento-Varón; Julieta Sepúlveda-Yañez; Mehdi D. Davari; Frédéric Cadet; Alvaro Olivera-Nappa; Roberto Uribe Paredes; et al. (Database J. Biol. Databases Curation, 2024)