Structure-based prediction of transcription factor binding specificity using an integrative energy function. - Alvin Farrel; Jonathan Murphy; Jun-tao Guo (Bioinform., 2016)

An efficient algorithm for improving structure-based prediction of transcription factor binding sites. - Alvin Farrel; Jun-tao Guo (BMC Bioinform., 2017)

ROGUE: an R Shiny app for RNA sequencing analysis and biomarker discovery. - Alvin Farrel; Peng Li; Sharon Veenbergen; Khushbu Patel; John M. Maris; Warren J. Leonard (BMC Bioinform., 2023)