AssociationViewer: a scalable and integrated software tool for visualization of large-scale variation data in genomic context. - Olivier Martin 002; Armand Valsesia; Amalio Telenti; Ioannis Xenarios; Brian J. Stevenson (Bioinform., 2009)

Joint analysis of host and pathogen genomes. - István Bartha; Amalio Telenti; Viktor Müller; Jacques Fellay (BIBM Workshops, 2011)

Addressing the concerns of the lacks family: quantification of kin genomic privacy. - Mathias Humbert; Erman Ayday; Jean-Pierre Hubaux; Amalio Telenti (CCS, 2013)

Reconciling Utility with Privacy in Genomics. - Mathias Humbert; Erman Ayday; Jean-Pierre Hubaux; Amalio Telenti (WPES, 2014)

On genomics, kin, and privacy. - Amalio Telenti; Erman Ayday; Jean-Pierre Hubaux (F1000Research, 2014)

Analysis of Stop-Gain and Frameshift Variants in Human Innate Immunity Genes. - Antonio Rausell; Pejman Mohammadi 001; Paul J. McLaren; István Bartha; Ioannis Xenarios; Jacques Fellay; Amalio Telenti (PLoS Comput. Biol., 2014)

On Non-cooperative Genomic Privacy. - Mathias Humbert; Erman Ayday; Jean-Pierre Hubaux; Amalio Telenti (Financial Cryptography, 2015)

Sincell: an R/Bioconductor package for statistical assessment of cell-state hierarchies from single-cell RNA-seq. - Miguel Juliá 002; Amalio Telenti; Antonio Rausell (Bioinform., 2015)

The Characteristics of Heterozygous Protein Truncating Variants in the Human Genome. - István Bartha; Antonio Rausell; Paul J. McLaren; Pejman Mohammadi 001; Manuel Tardaguila; Nimisha Chaturvedi; Jacques Fellay; Amalio Telenti (PLoS Comput. Biol., 2015)

PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS. - Feng Chen 016; Shuang Wang 002; Xiaoqian Jiang; Sijie Ding; Yao Lu 006; Jihoon Kim 001; Süleyman Cenk Sahinalp; Chisato Shimizu; Jane C. Burns; Victoria J. Wright; Eileen Png; Martin L. Hibberd; et al. (Bioinform., 2017)

Estimating the Respective Contributions of Human and Viral Genetic Variation to HIV Control. - István Bartha; Paul J. McLaren; Chanson J. Brumme; P. Richard Harrigan; Amalio Telenti; Jacques Fellay (PLoS Comput. Biol., 2017)

Quantifying Interdependent Risks in Genomic Privacy. - Mathias Humbert; Erman Ayday; Jean-Pierre Hubaux; Amalio Telenti (ACM Trans. Priv. Secur., 2017)

MP-NeRF: A massively parallel method for accelerating protein structure reconstruction from internal coordinates. - Eric Alcaide; Stella Biderman; Amalio Telenti; M. Cyrus Maher (J. Comput. Chem., 2022)

Ensuring Trust in Genomics Research. - Erman Ayday; Jaideep Vaidya; Xiaoqian Jiang; Amalio Telenti (TPS-ISA, 2023)