Modelling and receptor-based virtual screening studies of GPR139. - Aman Chandra Kaushik; Shakti Sahi (Int. J. Bioinform. Res. Appl., 2017)

Biological complexity: ant colony meta-heuristic optimization algorithm for protein folding. - Aman Chandra Kaushik; Shakti Sahi (Neural Comput. Appl., 2017)

Molecular modeling and molecular dynamics simulation-based structural analysis of GPR3. - Aman Chandra Kaushik; Shakti Sahi (Netw. Model. Anal. Health Informatics Bioinform., 2017)

Identification of novel drug targets for diamond-blackfan anemia based on RPS19 gene mutation using protein-protein interaction network. - Abbas Khan; Arif Ali; Muhammad Junaid; Chang Liu; Aman Chandra Kaushik; William C. S. Cho; Dong-Qing Wei (BMC Syst. Biol., 2018)

Identification of target gene and prognostic evaluation for lung adenocarcinoma using gene expression meta-analysis, network analysis and neural network algorithms. - Gurudeeban Selvaraj; Satyavani Kaliamurthi; Aman Chandra Kaushik; Abbas Khan; Yong-Kai Wei; William C. S. Cho; Keren Gu; Dong-Qing Wei (J. Biomed. Informatics, 2018)

Biological Data Analysis Program (BDAP): a multitasking biological sequence analysis program. - Vivek Dhar Dwivedi; Indra Prasad Tripathi; Aman Chandra Kaushik; Shiv Bharadwaj; Sarad Kumar Mishra (Neural Comput. Appl., 2018)

Bioinformatics Techniques for Drug Discovery - Applications for Complex Diseases - Aman Chandra Kaushik; Ajay Kumar; Shiv Bharadwaj; Ravi Chaudhary; Shakti Sahi (Springer, 2018)

AI-driven drug discovery: A boon against COVID-19? - Aman Chandra Kaushik; Utkarsh Raj (AI Open, 2020)

Mining Cancer Cell Line-Based Drugs to Benefit KRAS(G12D) Pancreatic Adenocarcinoma Patients. - Aman Chandra Kaushik; Aamir Mehmood; Ajay Kumar; Ankit Babu; Dong-Qing Wei; Zhongming Zhao (BIBM, 2021)

DTI-CDF: a cascade deep forest model towards the prediction of drug-target interactions based on hybrid features. - Yanyi Chu; Aman Chandra Kaushik; Xiangeng Wang; Wei Wang 309; Yufang Zhang; Xiaoqi Shan; Dennis Russell Salahub; Yi Xiong 002; Dong-Qing Wei (Briefings Bioinform., 2021)

Exosomal ncRNAs profiling of mycobacterial infection identified miRNA-185-5p as a novel biomarker for tuberculosis. - Aman Chandra Kaushik; Qiqi Wu; Li Lin; Haibo Li; Longqi Zhao; Zilu Wen; Yanzheng Song; Qihang Wu; Jin Wang; Xiaokui Guo; Hualin Wang; Xiaoli Yu; et al. (Briefings Bioinform., 2021)

Irinotecan and vandetanib create synergies for treatment of pancreatic cancer patients with concomitant TP53 and KRAS mutations. - Aman Chandra Kaushik; Yanjing Wang 003; Xiangeng Wang; Dong-Qing Wei (Briefings Bioinform., 2021)

Bringing Structural Implications and Deep Learning-Based Drug Identification for KRAS Mutants. - Aamir Mehmood; Aman Chandra Kaushik; Qiankun Wang; Cheng-Dong Li; Dong-Qing Wei (J. Chem. Inf. Model., 2021)

CoronaPep: An Anti-Coronavirus Peptide Generation Tool. - Aman Chandra Kaushik; Aamir Mehmood; Gurudeeban Selvaraj; Xiaofeng Dai; Yi Pan 001; Dong-Qing Wei (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Editorial: Computational Genomics and Molecular Medicine for Emerging COVID-19. - Dong-Qing Wei; Aman Chandra Kaushik; Gurudeeban Selvaraj; Yi Pan 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Discovering potent inhibitors against the Mpro of the SARS-CoV-2. A medicinal chemistry approach. - Aamir Mehmood; Sadia Nawab; Yanjing Wang 003; Aman Chandra Kaushik; Dong-Qing Wei (Comput. Biol. Medicine, 2022)

AI screening and molecular dynamic simulation-driven identification of novel inhibitors of TGFßR1 for pancreatic cancer therapy. - Samvedna Singh; Kiran Bharat Lokhande; Aman Chandra Kaushik; Ashutosh Singh; Shakti Sahi (Comput. Biol. Chem., 2024)

DDSBC: A Stacking Ensemble Classifier-Based Approach for Breast Cancer Drug-Pair Cell Synergy Prediction. - Aamir Mehmood; Aman Chandra Kaushik; Dong-Qing Wei (J. Chem. Inf. Model., 2024)

Towards interpretable drug interaction prediction via dual-stage attention and Bayesian calibration with active learning. - Rongpei Li; Yufang Zhang; Heqi Sun; Shenggeng Lin; Guihua Jia; Yitian Fang; Chen Zhang; Xiaotong Song; Jianwei Zhao; Lyubin Hu; Yajing Yuan; Xueying Mao; et al. (PeerJ Comput. Sci., 2025)