Shrinkage prediction of seed-voxel brain connectivity using resting state fMRI. - Haochang Shou; Ani Eloyan; Mary Beth Nebel; Amanda F. Mejia; James J. Pekar; Stewart H. Mostofsky; Brian S. Caffo; Martin A. Lindquist; Ciprian M. Crainiceanu (NeuroImage, 2014)

Improving reliability of subject-level resting-state fMRI parcellation with shrinkage estimators. - Amanda F. Mejia; Mary Beth Nebel; Haochang Shou; Ciprian M. Crainiceanu; James J. Pekar; Stewart H. Mostofsky; Brian Caffo; Martin A. Lindquist (NeuroImage, 2015)

Statistical estimation of T1 relaxation times using conventional magnetic resonance imaging. - Amanda F. Mejia; Elizabeth M. Sweeney; Blake Dewey; Govind Nair; Pascal Sati; Colin Shea; Daniel S. Reich; Russell T. Shinohara (NeuroImage, 2016)

Improved estimation of subject-level functional connectivity using full and partial correlation with empirical Bayes shrinkage. - Amanda F. Mejia; Mary Beth Nebel; Anita D. Barber; Ann S. Choe; James J. Pekar; Brian S. Caffo; Martin A. Lindquist (NeuroImage, 2018)

Psilocybin induces spatially constrained alterations in thalamic functional organizaton and connectivity. - Andrew Gaddis; Daniel E. Lidstone; Mary Beth Nebel; Roland R. Griffiths; Stewart H. Mostofsky; Amanda F. Mejia; Frederick Streeter Barrett (NeuroImage, 2022)

Longitudinal surface-based spatial Bayesian GLM reveals complex trajectories of motor neurodegeneration in ALS. - Amanda F. Mejia; Vincent Koppelmans; Laura Jelsone-Swain; Sanjay Kalra; Robert C. Welsh (NeuroImage, 2022)

ciftiTools: A package for reading, writing, visualizing, and manipulating CIFTI files in R. - Damon D. Pham; John Muschelli; Amanda F. Mejia (NeuroImage, 2022)

Spatial Bayesian GLM on the cortical surface produces reliable task activations in individuals and groups. - Daniel Spencer; Yu Ryan Yue; David Bolin; Sarah Ryan; Amanda F. Mejia (NeuroImage, 2022)

Template Independent Component Analysis with Spatial Priors for Accurate Subject-Level Brain Network Estimation and Inference. - Amanda F. Mejia; David Bolin; Yu Ryan Yue; Jiongran Wang; Brian S. Caffo; Mary Beth Nebel (J. Comput. Graph. Stat., 2023)

Less is more: balancing noise reduction and data retention in fMRI with data-driven scrubbing. - Damon D. Pham; Daniel J. McDonald; Lei Ding; Mary Beth Nebel; Amanda F. Mejia (NeuroImage, 2023)

Corrigendum to 'Psilocybin induces spatially constrained alterations in thalamic functional organizaton and connectivity': Neuroimage 2022 Oct 15;260:119434. - Andrew Gaddis; Daniel E. Lidstone; Mary Beth Nebel; Roland R. Griffiths; Stewart H. Mostofsky; Amanda F. Mejia; Frederick Streeter Barrett (NeuroImage, 2023)

Highlight results, don't hide them: Enhance interpretation, reduce biases and improve reproducibility. - Paul A. Taylor; Richard C. Reynolds; Vince D. Calhoun; Javier Gonzalez-Castillo; Daniel A. Handwerker; Peter A. Bandettini; Amanda F. Mejia; Gang Chen 008 (NeuroImage, 2023)