Compression of LC/MS Proteomic Data. - Agnieszka C. Miguel; John F. Keane; Jeffrey Whiteaker; Heidi Zhang; Amanda G. Paulovich (CBMS, 2006)

Normalization Regarding Non-Random Missing Values in High-Throughput Mass Spectrometry Data. - Pei Wang; Hua Tang; Heidi Zhang; Jeffrey Whiteaker; Amanda G. Paulovich; Martin McIntosh (Pacific Symposium on Biocomputing, 2006)

A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS. - Matthew Bellew; Marc Coram; Matthew Fitzgibbon; Mark Igra; Timothy W. Randolph 002; Pei Wang 014; Damon May; Jimmy K. Eng; Ruihua Fang; ChenWei Lin; Jinzhi Chen; David Goodlett; et al. (Bioinform., 2006)

Near-Lossless Compression of Mass Spectra for Proteomics. - Agnieszka C. Miguel; M. Kearney-Fischer; John F. Keane; Jeffrey Whiteaker; Li-Chia Feng; Amanda G. Paulovich (ICASSP (1), 2007)

DAGBagM: learning directed acyclic graphs of mixed variables with an application to identify protein biomarkers for treatment response in ovarian cancer. - Shrabanti Chowdhury; Ru Wang; Qing Yu; Catherine J. Huntoon; Larry M. Karnitz; Scott H. Kaufmann; Steven P. Gygi; Michael J. Birrer; Amanda G. Paulovich; Jie Peng; Pei Wang (BMC Bioinform., 2022)