Poster reception - Optimizing EUDOC for the IBM eServer Blue Gene supercomputer. - Yuan-Ping Pang; Brent A. Swartz; Brian E. Smith; Timothy J. Mullins; Amanda E. Peters; Roy G. Musselman (SC, 2006)

Parallel genomic sequence-search on a massively parallel system. - Oystein Thorsen; Brian E. Smith; Carlos P. Sosa; Karl Jiang; Heshan Lin; Amanda E. Peters; Wu-chun Feng (Conf. Computing Frontiers, 2007)

Asynchronous task dispatch for high throughput computing for the eServer IBM Blue Gene® Supercomputer. - Amanda E. Peters; Alan King; Tom Budnik; Paul McCarthy; Pat Michaud; Mike Mundy; Jim Sexton; Greg Stewart (IPDPS, 2008)

EUDOC on the IBM Blue Gene/L system: Accelerating the transfer of drug discoveries from laboratory to patient. - Yuan-Ping Pang; Timothy J. Mullins; Brent A. Swartz; Jeff S. McAllister; Brian E. Smith; Charles Archer; Roy G. Musselman; Amanda E. Peters; Brian P. Wallenfelt; Kurt W. Pinnow (IBM J. Res. Dev., 2008)

An Efficient Parallel Implementation of the Hidden Markov Methods for Genomic Sequence-Search on a Massively Parallel System. - Karl Jiang; Oystein Thorsen; Amanda E. Peters; Brian E. Smith; Carlos P. Sosa (IEEE Trans. Parallel Distributed Syst., 2008)

Multiscale Simulation of Cardiovascular flows on the IBM Bluegene/P: Full Heart-Circulation System at Red-Blood Cell Resolution. - Amanda Peters Randles; Simone Melchionna; Efthimios Kaxiras; Jonas Lätt; Joy K. Sircar; Massimo Bernaschi; Mauro Bisson; Sauro Succi (SC, 2010)

Efficient methods for broadcasting multi-slot messages with random access with capture. - Amanda E. Peters; Linda Zeger (MILCOM, 2011)

Drug discovery using very large numbers of patents. General strategy with extensive use of match and edit operations. - Barry Robson; Jin Li 004; Richard Dettinger; Amanda E. Peters; Stephen K. Boyer (J. Comput. Aided Mol. Des., 2011)

Evaluation of Artery Visualizations for Heart Disease Diagnosis. - Michelle Borkin; Krzysztof Gajos; Amanda Peters Randles; Dimitrios Mitsouras; Simone Melchionna; Frank J. Rybicki; Charles L. Feldman; Hanspeter Pfister (IEEE Trans. Vis. Comput. Graph., 2011)

A Lattice Boltzmann Simulation of Hemodynamics in a Patient-Specific Aortic Coarctation Model. - Amanda Peters Randles; Moritz Bächer; Hanspeter Pfister; Efthimios Kaxiras (STACOM, 2012)

Massively Parallel Model of Evolutionary Game Dynamics. - Amanda Peters Randles (SC Companion, 2012)

Performance Analysis of the Lattice Boltzmann Model Beyond Navier-Stokes. - Amanda Peters Randles; Vivek Kale; Jeff R. Hammond; William Gropp; Efthimios Kaxiras (IPDPS, 2013)

Massively Parallel Model of Extended Memory Use in Evolutionary Game Dynamics. - Amanda Peters Randles; David G. Rand; Christopher Lee; Greg Morrisett; Jayanta Sircar; Martin A. Nowak; Hanspeter Pfister (IPDPS, 2013)

Multiphysics simulations: Challenges and opportunities. - David E. Keyes; Lois C. McInnes; Carol S. Woodward; William Gropp; Eric Myra; Michael Pernice; John B. Bell; Jed Brown; Alain Clo; Jeffrey M. Connors; Emil M. Constantinescu; Donald J. Estep; et al. (Int. J. High Perform. Comput. Appl., 2013)

Analysis of Pressure Gradient Across Aortic Stenosis with Massively Parallel Computational Simulation. - Amanda Randles; Erik W. Draeger; Franziska Michor (CinC, 2014)

A Spatio-temporal Coupling Method to Reduce the Time-to-Solution of Cardiovascular Simulations. - Amanda Peters Randles; Efthimios Kaxiras (IPDPS, 2014)

MIC-SVM: Designing a Highly Efficient Support Vector Machine for Advanced Modern Multi-core and Many-Core Architectures. - Yang You 001; Shuaiwen Leon Song; Haohuan Fu; Andres Marquez 001; Maryam Mehri Dehnavi; Kevin J. Barker; Kirk W. Cameron; Amanda Peters Randles; Guangwen Yang (IPDPS, 2014)

Locality-Optimized Mixed Static/Dynamic Scheduling for Improving Load Balancing on SMPs. - Vivek Kale; Amanda Peters Randles; William D. Gropp (EuroMPI/ASIA, 2014)

Parallel in time approximation of the lattice Boltzmann method for laminar flows. - Amanda Peters Randles; Efthimios Kaxiras (J. Comput. Phys., 2014)

Massively parallel models of the human circulatory system. - Amanda Randles; Erik W. Draeger; Tomas Oppelstrup; Liam Krauss; John A. Gunnels (SC, 2015)

Reusing industrial robots to achieve sustainability in small and medium-sized enterprises (SMEs). - Zhu Ming Bi; Yanfei Liu; Blane Baumgartner; Eric Culver; J. N. Sorokin; Amanda E. Peters; Blaine Cox; Jessica Hunnicutt; John Yurek; Stephen O'Shaughnessey (Ind. Robot, 2015)

Massively parallel simulations of hemodynamics in the primary large arteries of the human vasculature. - Amanda Randles; Erik W. Draeger; Peter E. Bailey (J. Comput. Sci., 2015)

Scaling Support Vector Machines on modern HPC platforms. - Yang You 001; Haohuan Fu; Shuaiwen Leon Song; Amanda Peters Randles; Darren J. Kerbyson; Andres Marquez 001; Guangwen Yang; Adolfy Hoisie (J. Parallel Distributed Comput., 2015)

Does the degree of coarctation of the aorta influence wall shear stress focal heterogeneity? - John Gounley; Rafeed Chaudhury; Madhurima Vardhan; Michael Driscoll; Girish Pathangey; Kevin Winarta; Justin Ryan; David H. Frakes; Amanda Randles (EMBC, 2016)

Numerical simulation of a compound capsule in a constricted microchannel. - John Gounley; Erik W. Draeger; Amanda Randles (ICCS, 2017)

A Computational Framework to Assess the Influence of Changes in Vascular Geometry on Blood Flow. - John Gounley; Madhurima Vardhan; Amanda Randles (PASC, 2017)

Computational Fluid Modeling to Understand the Role of Anatomy in Bifurcation Lesion Disease. - Madhurima Vardhan; Arpita Das; Jonn Gouruev; Amanda Randles (HiPC Workshops, 2018)

GPU Data Access on Complex Geometries for D3Q19 Lattice Boltzmann Method. - Gregory Herschlag; Seyong Lee; Jeffrey S. Vetter; Amanda Randles (IPDPS, 2018)

Multi-physics simulations of particle tracking in arterial geometries with a scalable moving window algorithm. - Gregory Herschlag; John Gounley; Sayan Roychowdhury; Erik W. Draeger; Amanda Randles (CLUSTER, 2019)

Immersed Boundary Method Halo Exchange in a Hemodynamics Application. - John Gounley; Erik W. Draeger; Amanda Randles (ICCS (1), 2019)

Low-Overhead In Situ Visualization Using Halo Replay. - Jeff Ames; Silvio Rizzi 001; Joseph A. Insley; Saumil Patel; Benjamín Hernández; Erik W. Draeger; Amanda Randles (LDAV, 2019)

Investigating the Role of VR in a Simulation-Based Medical Planning System for Coronary Interventions. - Madhurima Vardhan; Harvey Shi; John Gounley; S. James Chen; Andrew Kahn; Jane A. Leopold; Amanda Randles (MICCAI (5), 2019)

Moment representation in the lattice Boltzmann method on massively parallel hardware. - Madhurima Vardhan; John Gounley; Luiz Hegele; Erik W. Draeger; Amanda Randles (SC, 2019)

A framework for comparing vascular hemodynamics at different points in time. - John Gounley; Madhurima Vardhan; Amanda Randles (Comput. Phys. Commun., 2019)

Performance portability study for massively parallel computational fluid dynamics application on scalable heterogeneous architectures. - Seyong Lee; John Gounley; Amanda Randles; Jeffrey S. Vetter (J. Parallel Distributed Comput., 2019)

Computational Framework to Evaluate the Hydrodynamics of Cell Scaffold Geometries. - Daniel F. Puleri; Sayan Roychowdhury; Jeff Ames; Amanda Randles (EMBC, 2020)

Evaluating the Influence of Hemorheological Parameters on Circulating Tumor Cell Trajectory and Simulation Time. - Sayan Roychowdhury; John Gounley; Amanda Randles (PASC, 2020)

Cloud Computing for COVID-19: Lessons Learned From Massively Parallel Models of Ventilator Splitting. - Michael Kaplan; Charles Kneifel; Victor Orlikowski; James Dorff; Mike Newton; Andy Howard; Don Shinn; Muath Bishawi; Simbarashe Chidyagwai; Peter Balogh; Amanda Randles (Comput. Sci. Eng., 2020)

Multi-GPU immersed boundary method hemodynamics simulations. - Jeff Ames; Daniel F. Puleri; Peter Balogh; John Gounley; Erik W. Draeger; Amanda Randles (J. Comput. Sci., 2020)

Harvis: an interactive virtual reality tool for hemodynamic modification and simulation. - Harvey Shi; Jeff Ames; Amanda Randles (J. Comput. Sci., 2020)

Predicting aneurysmal degeneration of type B aortic dissection with computational fluid dynamics. - Bradley Feiger; Erick Lorenzana; David Ranney; Muath Bishawi; Julie Doberne; Andrew Vekstein; Soraya Voigt; G. Chad Hughes; Amanda Randles (BCB, 2021)

An Interpretable Machine Learning Model to Classify Coronary Bifurcation Lesions. - Xiaoqian Liu; Madhurima Vardhan; Qinrou Wen; Arpita Das; Amanda Randles; Eric C. Chi (EMBC, 2021)

Global Sensitivity Analysis For Clinically Validated 1D Models of Fractional Flow Reserve. - Cyrus Tanade; Bradley Feiger; Madhurima Vardhan; S. James Chen; Jane A. Leopold; Amanda Randles (EMBC, 2021)

Multiscale modeling of blood flow to assess neurological complications in patients supported by venoarterial extracorporeal membrane oxygenation. - Bradley Feiger; Adebayo Adebiyi; Amanda Randles (Comput. Biol. Medicine, 2021)

DOE Computational Science Graduate Fellowship Research Showcase. - Jaydeep P. Bardhan; Mary Ann E. Leung; Eileen Martin; Amanda Randles (Comput. Sci. Eng., 2021)

Analysis of GPU Data Access Patterns on Complex Geometries for the D3Q19 Lattice Boltzmann Algorithm. - Gregory J. Herschlag; Seyong Lee; Jeffrey S. Vetter; Amanda Randles (IEEE Trans. Parallel Distributed Syst., 2021)

High Performance Adaptive Physics Refinement to Enable Large-Scale Tracking of Cancer Cell Trajectory. - Daniel F. Puleri; Sayan Roychowdhury; Peter Balogh; John Gounley; Erik W. Draeger; Jeff Ames; Adebayo Adebiyi; Simbarashe Chidyagwai; Benjamín Hernández; Seyong Lee; Shirley V. Moore; Jeffrey S. Vetter; et al. (CLUSTER, 2022)

Patient- and Ventilator-Specific Modeling to Drive the Use and Development of 3D Printed Devices for Rapid Ventilator Splitting During the COVID-19 Pandemic. - Muath Bishawi; Michael Kaplan; Simbarashe Chidyagwai; Jhaymie Cappiello; Anne Cherry; David MacLeod; Ken Gall; Nathan Evans; Michael Kim; Rajib Shaha; John Whittle; Melanie Hollidge; et al. (ICCS (3), 2022)

Establishing Metrics to Quantify Underlying Structure in Vascular Red Blood Cell Distributions. - Sayan Roychowdhury; Erik W. Draeger; Amanda Randles (ICCS (1), 2022)

Developing a Scalable Cellular Automaton Model of 3D Tumor Growth. - Cyrus Tanade; Sarah B. Putney; Amanda Randles (ICCS (1), 2022)

Distributed Acceleration of Adhesive Dynamics Simulations. - Daniel F. Puleri; Aristotle X. Martin; Amanda Randles (EuroMPI, 2022)

The role of extended reality for planning coronary artery bypass graft surgery. - Madhurima Vardhan; Harvey Shi; David Urick; Manesh Patel; Jane A. Leopold; Amanda Randles (IEEE VIS (Short Papers), 2022)

Evaluating Cardiovascular Surgical Planning in Mobile Augmented Reality. - Haoyang Yang; Pratham Darrpan Mehta; Jonathan Leo; Zhiyan Zhou; Megan Dass; Anish Upadhayay; Timothy C. Slesnick; Fawwaz Shaw; Amanda Randles; Duen Horng Chau (CoRR, 2022)

Evaluation of U-Net Based Architectures for Automatic Aortic Dissection Segmentation. - Bradley Feiger; Erick Lorenzana-Saldivar; Colin L. V. Cooke; Roarke Horstmeyer; Muath Bishawi; Julie Doberne; G. Chad Hughes; David Ranney; Soraya Voigt; Amanda Randles (ACM Trans. Comput. Heal., 2022)

Propagation Pattern for Moment Representation of the Lattice Boltzmann Method. - John Gounley; Madhurima Vardhan; Erik W. Draeger; Pedro Valero-Lara; Shirley V. Moore; Amanda Randles (IEEE Trans. Parallel Distributed Syst., 2022)

Optimizing Cloud Computing Resource Usage for Hemodynamic Simulation. - William Ladd; Christopher Jensen; Madhurima Vardhan; Jeff Ames; Jeff R. Hammond; Erik W. Draeger; Amanda Randles (IPDPS, 2023)

Low-Cost Post Hoc Reconstruction of HPC Simulations at Full Resolution. - Ayman Z. Yousef; Erik W. Draeger; Amanda Randles (LDAV, 2023)

Performance Evaluation of Heterogeneous GPU Programming Frameworks for Hemodynamic Simulations. - Aristotle X. Martin; Geng Liu; William Ladd; Seyong Lee; John Gounley; Jeffrey S. Vetter; Saumil Patel; Silvio Rizzi 001; Victor A. Mateevitsi; Joseph A. Insley; Amanda Randles (SC Workshops, 2023)

Enhancing Adaptive Physics Refinement Simulations Through the Addition of Realistic Red Blood Cell Counts. - Sayan Roychowdhury; Samreen T. Mahmud; Aristotle X. Martin; Peter Balogh; Daniel F. Puleri; John Gounley; Erik W. Draeger; Amanda Randles (SC, 2023)

Cloud Computing to Enable Wearable-Driven Longitudinal Hemodynamic Maps. - Cyrus Tanade; Emily Rakestraw; William Ladd; Erik W. Draeger; Amanda Randles (SC, 2023)

Moment Representation of Regularized Lattice Boltzmann Methods on NVIDIA and AMD GPUs. - Pedro Valero-Lara; Jeffrey S. Vetter; John Gounley; Amanda Randles (SC Workshops, 2023)

Establishing metrics to quantify spatial similarity in spherical and red blood cell distributions. - Sayan Roychowdhury; Erik W. Draeger; Amanda Randles (J. Comput. Sci., 2023)

Establishing massively parallel models to examine the influence of cell heterogeneity on tumor growth. - Cyrus Tanade; Sarah B. Putney; Amanda Randles (J. Comput. Sci., 2023)

Effect of constitutive law on the erythrocyte membrane response to large strains. - Marianna Pepona; John Gounley; Amanda Randles (Comput. Math. Appl., 2023)

Optimizing Temporal Waveform Analysis: A Novel Pipeline for Efficient Characterization of Left Coronary Artery Velocity Profiles. - Justen R. Geddes; Amanda Randles (EMBC, 2024)

Systematic characterization and automated alignment of coronary tree geometries. - Arash Ghorbannia; Amanda Randles (EMBC, 2024)

Identifying When Steady-State Flow Simulations In Patient-Specific Coronaries Recapitulate Pulsatile Flow Dynamics. - Maximilian Huber; Juliet Jiang; Cyrus Tanade; Amanda Randles (EMBC, 2024)

Hemodynamics comparison of an hour-long rest and activity state data in a human coronary digital twin. - Japneet Kaur Mavi; Cyrus Tanade; William Ladd; Justen R. Geddes; Nusrat Sadia Khan; Amanda Randles (EMBC, 2024)

Leveraging Computational Fluid Dynamics for Next-Generation Preoperative Planning in Vascular Surgery. - Sreekanth Vemulapalli; Adebayo Adebiyi; Christopher Jensen; E. Hope Weissler; Taku Inohara; S. James Chen; Emily Rakestraw; Kevin Southerland; Amanda Randles (EMBC, 2024)

Investigating the impact of sickle cell disease on red blood cell transport in complex capillary networks. - Runxin Wu; Mohammed Shihab Kabir; George A. Truskey; Amanda Randles (EMBC, 2024)

Velocity Temporal Shape Affects Simulated Flow in Left Coronary Arteries. - Justen R. Geddes; Cyrus Tanade; William Ladd; Nusrat Sadia Khan; Amanda Randles (ICCS (1), 2024)

HarVI: Real-Time Intervention Planning for Coronary Artery Disease Using Machine Learning. - Cyrus Tanade; Amanda Randles (ICCS (1), 2024)

Designing a GPU-Accelerated Communication Layer for Efficient Fluid-Structure Interaction Computations on Heterogeneous Systems. - Aristotle X. Martin; Geng Liu; Bálint Joó; Runxin Wu; Mohammed Shihab Kabir; Erik W. Draeger; Amanda Randles (SC, 2024)

Establishing the longitudinal hemodynamic mapping framework for wearable-driven coronary digital twins. - Cyrus Tanade; Nusrat Sadia Khan; Emily Rakestraw; William Ladd; Erik W. Draeger; Amanda Randles (npj Digit. Medicine, 2024)

Microfluidic Digital Twin for Enhanced Single-Cell Analysis. - Samreen T. Mahmud; Wentao Ma; Taylor Thomsen; Chang Chen; Rachel Rex; Andre Lai; Lydia L. Sohn; Amanda Randles (ICCS (1), 2025)

Adaptive Physics Refinement for Anatomic Adhesive Dynamics Simulations. - Aristotle X. Martin; William Ladd; Runxin Wu; Amanda Randles (ICCS (1), 2025)

Performance Portability Evaluation of Fluid-Structure Interaction Simulations on Heterogeneous Platforms. - Aristotle X. Martin; Ayman Z. Yousef; Geng Liu; William Ladd; Antigoni Georgiadou; Jorik Stoop; Amanda Randles (ISC, 2025)

Impact of inlet velocity waveform shape on hemodynamics. - Justen R. Geddes; Timothy D. King; Cyrus Tanade; William Ladd; Nusrat Sadia Khan; Amanda Randles (J. Comput. Sci., 2025)

Establishing a massively parallel computational model of the adaptive immune response. - Aristotle X. Martin; Max Nezdyur; Cyrus Tanade; Amanda Randles (J. Comput. Sci., 2025)

Real-time virtual intervention for simple and serial coronary artery disease using the HarVI framework. - Cyrus Tanade; Amanda Randles (J. Comput. Sci., 2025)