Multiple sequence alignment with user-defined constraints. - Burkhard Morgenstern; Sonja J. Prohaska; Nadine Werner; Jan Weyer-Menkhoff; Isabelle Schneider; Amarendran Ramaswami Subramanian; Peter F. Stadler (German Conference on Bioinformatics, 2004)

Multiple sequence alignment with user-defined constraints at GOBICS. - Burkhard Morgenstern; Nadine Werner; Sonja J. Prohaska; Rasmus Steinkamp; Isabelle Schneider; Amarendran Ramaswami Subramanian; Peter F. Stadler; Jan Weyer-Menkhoff (Bioinform., 2005)

DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment. - Amarendran Ramaswami Subramanian; Jan Weyer-Menkhoff; Michael Kaufmann 001; Burkhard Morgenstern (BMC Bioinform., 2005)

Max-tolerance graphs as intersection graphs: cliques, cycles, and recognition. - Michael Kaufmann 001; Jan Kratochvíl; Katharina Anna Lehmann; Amarendran Ramaswami Subramanian (SODA, 2006)

DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment. - Amarendran Ramaswami Subramanian; Michael Kaufmann 001; Burkhard Morgenstern (Algorithms Mol. Biol., 2008)

Segment-based multiple sequence alignment. - Amarendran Ramaswami Subramanian (2009)

DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS. - Amarendran Ramaswami Subramanian; Suvrat Hiran; Rasmus Steinkamp; Peter Meinicke; Eduardo Corel; Burkhard Morgenstern (Nucleic Acids Res., 2010)