Combining Independent Syntactic and Semantic Annotation Schemes. - Marc Verhagen; Amber Stubbs; James Pustejovsky (LAW@ACL, 2007)

Applying the TARSQI Toolkit to Augment Text Mining of EHRs. - Amber Stubbs; Benjamin Harshfield (BioNLP@ACL, 2010)

Increasing Informativeness in Temporal Annotation. - James Pustejovsky; Amber Stubbs (Linguistic Annotation Workshop, 2011)

MAE and MAI: Lightweight Annotation and Adjudication Tools. - Amber Stubbs (Linguistic Annotation Workshop, 2011)

Natural Language Annotation for Machine Learning - a Guide to Corpus-Building for Applications. - James Pustejovsky; Amber Stubbs (O'Reilly, 2012)

Chronology of your health events: Approaches to extracting temporal relations from medical narratives. - Özlem Uzuner; Amber Stubbs; Weiyi Sun (J. Biomed. Informatics, 2013)

Biomedical/Clinical NLP. - Özlem Uzuner; Meliha Yetisgen; Amber Stubbs (COLING (Tutorials), 2014)

Challenges in Synthesizing Surrogate PHI in Narrative EMRs. - Amber Stubbs; Özlem Uzuner; Christopher Kotfila; Ira Goldstein; Peter Szolovits (Medical Data Privacy Handbook, 2015)

Creation of a new longitudinal corpus of clinical narratives. - Vishesh Kumar; Amber Stubbs; Stanley Y. Shaw; Özlem Uzuner (J. Biomed. Informatics, 2015)

Automated systems for the de-identification of longitudinal clinical narratives: Overview of 2014 i2b2/UTHealth shared task Track 1. - Amber Stubbs; Christopher Kotfila; Özlem Uzuner (J. Biomed. Informatics, 2015)

Identifying risk factors for heart disease over time: Overview of 2014 i2b2/UTHealth shared task Track 2. - Amber Stubbs; Christopher Kotfila; Hua Xu 001; Özlem Uzuner (J. Biomed. Informatics, 2015)

Annotating longitudinal clinical narratives for de-identification: The 2014 i2b2/UTHealth corpus. - Amber Stubbs; Özlem Uzuner (J. Biomed. Informatics, 2015)

Annotating risk factors for heart disease in clinical narratives for diabetic patients. - Amber Stubbs; Özlem Uzuner (J. Biomed. Informatics, 2015)

Practical applications for natural language processing in clinical research: The 2014 i2b2/UTHealth shared tasks. - Özlem Uzuner; Amber Stubbs (J. Biomed. Informatics, 2015)

Ease of adoption of clinical natural language processing software: An evaluation of five systems. - Kai Zheng 002; V. G. Vinod Vydiswaran; Yang Liu 019; Yue Wang 035; Amber Stubbs; Özlem Uzuner; Anupama E. Gururaj; Samuel Bayer; John S. Aberdeen; Anna Rumshisky; Serguei Pakhomov; Hongfang Liu; et al. (J. Biomed. Informatics, 2015)

Team-Teaching with Colleagues in the Arts and Humanities. - Keith J. O'Hara; Sven Anderson; David R. Musicant; Amber Stubbs; Thomas P. Way (SIGCSE, 2018)

Corrigendum to "Symptom severity prediction from neuropsychiatric clinical records: Overview of 2016 CEGS N-GRID shared tasks Track 2" [J Biomed Inform. 2017 Nov;75S: S62-S70]. - Michele Filannino; Amber Stubbs; Özlem Uzuner (J. Biomed. Informatics, 2018)

Cohort selection for clinical trials: n2c2 2018 shared task track 1. - Amber Stubbs; Michele Filannino; Ergin Soysal; Samuel Henry 001; Özlem Uzuner (J. Am. Medical Informatics Assoc., 2019)

New approaches to cohort selection. - Amber Stubbs; Özlem Uzuner (J. Am. Medical Informatics Assoc., 2019)

2018 n2c2 shared task on adverse drug events and medication extraction in electronic health records. - Sam Henry 001; Kevin Buchan; Michele Filannino; Amber Stubbs; Özlem Uzuner (J. Am. Medical Informatics Assoc., 2020)

Advancing the state of the art in automatic extraction of adverse drug events from narratives. - Özlem Uzuner; Amber Stubbs; Leslie Lenert (J. Am. Medical Informatics Assoc., 2020)