3did: interacting protein domains of known three-dimensional structure. - Amelie Stein; Robert B. Russell; Patrick Aloy (Nucleic Acids Res., 2005)

Approved Drug Mimics of Short Peptide Ligands from Protein Interaction Motifs. - Laavanya Parthasarathi; Fergal P. Casey; Amelie Stein; Patrick Aloy; Denis C. Shields (J. Chem. Inf. Model., 2008)

3did Update: domain-domain and peptide-mediated interactions of known 3D structure. - Amelie Stein; Alejandro Panjkovich; Patrick Aloy (Nucleic Acids Res., 2009)

Novel Peptide-Mediated Interactions Derived from High-Resolution 3-Dimensional Structures. - Amelie Stein; Patrick Aloy (PLoS Comput. Biol., 2010)

3did: identification and classification of domain-based interactions of known three-dimensional structure. - Amelie Stein; Arnaud Céol; Patrick Aloy (Nucleic Acids Res., 2011)

3did: a catalog of domain-based interactions of known three-dimensional structure. - Roberto Mosca 002; Arnaud Céol; Amelie Stein; Roger Olivella; Patrick Aloy (Nucleic Acids Res., 2014)