Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems. - Jason E. McDermott; Harish Shankaran; Amie J. Eisfeld; Sarah E. Belisle; Gabriele Neumann; Chengjun Li; Shannon K. McWeeney; Carol Sabourin; Yoshihiro Kawaoka; Michael G. Katze; Katrina M. Waters (BMC Syst. Biol., 2011)

Integrated network analysis reveals a novel role for the cell cycle in 2009 pandemic influenza virus-induced inflammation in macaque lungs. - Jason E. Shoemaker; Satoshi Fukuyama; Amie J. Eisfeld; Yukiko Muramoto; Shinji Watanabe 007; Tokiko Watanabe; Yukiko Matsuoka; Hiroaki Kitano; Yoshihiro Kawaoka (BMC Syst. Biol., 2012)

A comprehensive map of the influenza A virus replication cycle. - Yukiko Matsuoka; Hiromi Matsumae; Manami Katoh; Amie J. Eisfeld; Gabriele Neumann; Takeshi Hase; Samik Ghosh; Jason E. Shoemaker; Tiago J. S. Lopes; Tokiko Watanabe; Shinji Watanabe 007; Satoshi Fukuyama; et al. (BMC Syst. Biol., 2013)

Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice. - Nicolas Tchitchek; Amie J. Eisfeld; Jennifer Tisoncik-Go; Laurence Josset; Lisa E. Gralinski; Christophe Bécavin; Susan C. Tilton; Bobbie-Jo M. Webb-Robertson; Martin T. Ferris; Allison L. Totura; Chengjun Li; Gabriele Neumann; et al. (BMC Syst. Biol., 2013)

Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions. - Martin H. Schaefer 001; Tiago J. S. Lopes; Nancy Mah; Jason E. Shoemaker; Yukiko Matsuoka; Jean-Fred Fontaine; Caroline Louis-Jeune; Amie J. Eisfeld; Gabriele Neumann; Carol Perez-Iratxeta; Yoshihiro Kawaoka; Hiroaki Kitano; et al. (PLoS Comput. Biol., 2013)

Multi-task consensus clustering of genome-wide transcriptomes from related biological conditions. - Zhen Niu; Deborah Chasman; Amie J. Eisfeld; Yoshihiro Kawaoka; Sushmita Roy (Bioinform., 2016)

The effect of inhibition of PP1 and TNFα signaling on pathogenesis of SARS coronavirus. - Jason E. McDermott; Hugh D. Mitchell; Lisa E. Gralinski; Amie J. Eisfeld; Laurence Josset; Armand Bankhead III; Gabriele Neumann; Susan C. Tilton; Alexandra Schäfer; Chengjun Li; Shufang Fan; Shannon K. McWeeney; et al. (BMC Syst. Biol., 2016)

Integrating Transcriptomic and Proteomic Data Using Predictive Regulatory Network Models of Host Response to Pathogens. - Deborah Chasman; Kevin B. Walters; Tiago J. S. Lopes; Amie J. Eisfeld; Yoshihiro Kawaoka; Sushmita Roy (PLoS Comput. Biol., 2016)

Hypergraph models of biological networks to identify genes critical to pathogenic viral response. - Song Feng; Emily Heath; Brett A. Jefferson; Cliff A. Joslyn; Henry Kvinge; Hugh D. Mitchell; Brenda Praggastis; Amie J. Eisfeld; Amy C. Sims; Larissa B. Thackray; Shufang Fan; Kevin B. Walters; et al. (BMC Bioinform., 2021)