Sinkhorn Permutation Variational Marginal Inference. - Gonzalo E. Mena; Erdem Varol; Amin Nejatbakhsh; Eviatar Yemini; Liam Paninski (AABI, 2019)

Robust approximate linear regression without correspondence. - Erdem Varol; Amin Nejatbakhsh (CoRR, 2019)

Wasserstein total variation filtering. - Erdem Varol; Amin Nejatbakhsh (CoRR, 2019)

Temporal Wasserstein non-negative matrix factorization for non-rigid motion segmentation and spatiotemporal deconvolution. - Erdem Varol; Amin Nejatbakhsh; Conor McGrory (CoRR, 2019)

Probabilistic Joint Segmentation and Labeling of C. elegans Neurons. - Amin Nejatbakhsh; Erdem Varol; Eviatar Yemini; Oliver Hobert; Liam Paninski (MICCAI (5), 2020)

Demixing Calcium Imaging Data in C. elegans via Deformable Non-negative Matrix Factorization. - Amin Nejatbakhsh; Erdem Varol; Eviatar Yemini; Vivek Venkatachalam; Albert Lin; Aravinthan D. T. Samuel; Oliver Hobert; Liam Paninski (MICCAI (5), 2020)

Statistical Atlas of C. elegans Neurons. - Erdem Varol; Amin Nejatbakhsh; Ruoxi Sun 006; Gonzalo E. Mena; Eviatar Yemini; Oliver Hobert; Liam Paninski (MICCAI (5), 2020)

Sinkhorn EM: An Expectation-Maximization algorithm based on entropic optimal transport. - Gonzalo E. Mena; Amin Nejatbakhsh; Erdem Varol; Jonathan Niles-Weed (CoRR, 2020)

Estimating the Unique Information of Continuous Variables. - Ari Pakman; Amin Nejatbakhsh; Dar Gilboa; Abdullah Makkeh; Luca Mazzucato; Michael Wibral; Elad Schneidman (NeurIPS, 2021)

Neuron matching in C. elegans with robust approximate linear regression without correspondence. - Amin Nejatbakhsh; Erdem Varol (WACV, 2021)

Toward a more accurate 3D atlas of C. elegans neurons. - Michael Skuhersky; Tailin Wu; Eviatar Yemini; Amin Nejatbakhsh; Edward S. Boyden; Max Tegmark (BMC Bioinform., 2022)

Learning Probabilistic Piecewise Rigid Atlases of Model Organisms via Generative Deep Networks. - Amin Nejatbakhsh; Neel Dey; Vivek Venkatachalam; Eviatar Yemini; Liam Paninski; Erdem Varol (IPMI, 2023)

Estimating Noise Correlations Across Continuous Conditions With Wishart Processes. - Amin Nejatbakhsh; Isabel Garon; Alex Williams (NeurIPS, 2023)

Versatile multiple object tracking in sparse 2D/3D videos via deformable image registration. - James Ryu; Amin Nejatbakhsh; Mahdi Torkashvand; Sahana Gangadharan; Maedeh Seyedolmohadesin; Jinmahn Kim; Liam Paninski; Vivek Venkatachalam (PLoS Comput. Biol., 2024)

Comparing noisy neural population dynamics using optimal transport distances. - Amin Nejatbakhsh; Victor Geadah; Alex H. Williams; David Lipshutz (ICLR, 2025)