Using Dynamic Programming For Minimizing The Energy Of Active Contours In The Presence Of Hard Constraints. - Amir A. Amini; Saeid Tehrani; Terry E. Weymouth (ICCV, 1988)

A parallel algorithm for determining two-dimensional object positions using incomplete information about their boundaries. - Amir A. Amini; Terry E. Weymouth; David J. Anderson (Pattern Recognit., 1989)

Using Dynamic Programming for Solving Variational Problems in Vision. - Amir A. Amini; Terry E. Weymouth; Ramesh C. Jain (IEEE Trans. Pattern Anal. Mach. Intell., 1990)

Using dynamic programming for solving variational problems in vision: Applications involving deformable models for contours and surfaces. - Amir A. Amini (1990)

Non-Rigid Motion Models for Tracking the Left Ventricular Wall. - Amir A. Amini; R. L. Owen; P. Anandan 001; James S. Duncan (IPMI, 1991)

Bending and stretching models for LV wall motion analysis from curves and surfaces. - Amir A. Amini; James S. Duncan (Image Vis. Comput., 1992)

A Scalar Function Formulation for Optical Flow. - Amir A. Amini (ECCV (1), 1994)

Snakes and Splines for Tracking Non-Rigid Heart Motion. - Amir A. Amini; Rupert W. Curwen; John C. Gore (ECCV (2), 1996)

Biomedical Image Analysis. - Amir A. Amini; Fred L. Bookstein; David C. Wilson (Comput. Vis. Image Underst., 1997)

Deformable B-Solids and Implicit Snakes for 3D Localization and Tracking of SPAMM MRI Data. - Petia Radeva; Amir A. Amini; Jiantao Huang (Comput. Vis. Image Underst., 1997)

Quantitative Coronary Angiography with Deformable Spline Models. - Andreas K. Klein; Forester Lee; Amir A. Amini (IEEE Trans. Medical Imaging, 1997)

Flexible Shapes for Segmentation and Tracking of Cardiovascular Data. - Amir A. Amini; Jiantao Huang; Andreas K. Klein; Petia Radeva; Mohamed Elayyadi (ICIP (2), 1998)

Anatomical Object Volumes from Deformable B-spline Surface Models. - Jiantao Huang; Amir A. Amini (ICIP (1), 1998)

Dense 2d Displacement Reconstruction from SPAMM-MRI with Constrained Elastic Splines: Implementation and Validation. - Amir A. Amini; Yasheng Chen; Jean Sun; Vaidy Mani (MICCAI, 1998)

Measurement of 3D Motion of Myocardial Material Points from Explicit B-Surface Reconstruction of Tagged MRI Data. - Amir A. Amini; Petia Radeva; Mohamed Elayyadi; Debiao Li (MICCAI, 1998)

Coupled B-Snake Grids and Constrained Thin-Plate Splines for Analysis of 2D Tissue Deformations from Tagged MRI. - Amir A. Amini; Yasheng Chen; Rupert W. Curwen; Vaidy Mani; Jean Sun (IEEE Trans. Medical Imaging, 1998)

Four-Dimensional LV Tissue Tracking from Tagged MRI with a 4D B-Spline Model. - Jiantao Huang; Amir A. Amini (IPMI, 1999)

Comparison of Land-Mark-Based and Curve-Based Thin-Plate Warps for Analysis of Left-Ventricular Motion from Tagged MRI. - Amir A. Amini; Yasheng Chen; Dana Abendschein (MICCAI, 1999)

Spatio-Temporal Tracking of Myocardial Deformation with a 4D B-Spline Model from Tagged MRI. - Jiantao Huang; Dana Abendschein; Victor G. Dávila-Román; Amir A. Amini (IEEE Trans. Medical Imaging, 1999)

Tag Surface Reconstruction and Tracking of Myocardial Beads from SPAMM-MRI with Parametric B-Spline Surfaces. - Amir A. Amini; Yasheng Chen; Mohamed Elayyadi; Petia Radeva (IEEE Trans. Medical Imaging, 2001)

Fast LV Motion Estimation Using Subspace Approximation Techniques. - Yu-Ping Wang; Yasheng Chen; Amir A. Amini (IEEE Trans. Medical Imaging, 2001)

Myocardial Strain Imaging with Tagged MRI. - Nicholas J. Tustison; Dana Abendschein; Victor G. Dávila-Román; Amir A. Amini (ICPR (1), 2002)

A MAP Framework for Tag Line Detection in SPAMM Data Using Markov Random Fields on the B-Spline Solid. - Yasheng Chen; Amir A. Amini (IEEE Trans. Medical Imaging, 2002)

Myocardial kinematics from tagged MRI based on a 4-D B-spline model. - Nicholas J. Tustison; Victor G. Dávila-Román; Amir A. Amini (IEEE Trans. Biomed. Eng., 2003)

Regularization of Flow Streamlines in Multislice Phase-Contrast MRI. - Nasser Fatouraee; Amir A. Amini (IEEE Trans. Medical Imaging, 2003)

Biventricular Myocardial Kinematics Based on Tagged MRI from Anatomical NURBS Models. - Nicholas J. Tustison; Dana Abendschein; Amir A. Amini (CVPR (2), 2004)

Quantifying 3-D vascular structures in MRA images using hybrid PDE and geometric deformable models. - Jian Chen; Amir A. Amini (IEEE Trans. Medical Imaging, 2004)

Integrable Pressure Gradients via Harmonics-Based Orthogonal Projection. - Yuehuan Wang; Amir A. Amini (IPMI, 2005)

Vascular Imaging. - Alejandro F. Frangi; Amir A. Amini; Elizabeth Bullitt (IEEE Trans. Medical Imaging, 2005)

Biventricular myocardial strains via nonrigid registration of AnFigatomical NURBS models. - Nicholas J. Tustison; Amir A. Amini (IEEE Trans. Medical Imaging, 2006)

Imaging and Analysis for Determination of Cardiovascular Mechanics. - Amir A. Amini; Jian Chen; Yuehuan Wang (ISBI, 2007)

A multi-scale non-linear vessel enhancement technique. - Behnaz Abdollahi; Ayman El-Baz; Amir A. Amini (EMBC, 2011)

An improved real-time cine Late Gadolinium Enhancement (LGE) imaging method at 3T. - Mo Kadbi; Melanie Kotys; Motaz Alshaher; Stefan E. Fischer; Amir A. Amini (EMBC, 2011)

Multi-scale optical flow including normalized mutual information for planar deformable lung motion estimation from 4D CT. - Mohammadreza Negahdar; Amir A. Amini (EMBC, 2011)

Estimation of affine motion from projection data using a mass conservation model. - Mohammadreza Negahdar; Amir A. Amini (EMBC, 2011)

Rapid flow quantification in iliac arteries with spiral phase-contrast MRI. - M. J. Negahdar; Mo Kadbi; Melanie Kotys; Motaz Alshaher; Stefan E. Fischer; Amir A. Amini (EMBC, 2011)

Orthogonal CSPAMM (OCSPAMM) MR tagging for imaging ventricular wall motion. - Hui Wang; Mo Kadbi; Melanie Kotys; Mehmet Ersoy; George P. Chatzimavroudis; Randolph M. Setser; Motaz Alshaher; Stefan E. Fischer; Amir A. Amini (EMBC, 2011)

Planar deformable motion estimation incorporating mass conservation and image gradient constancy. - Mohammadreza Negahdar; Amir A. Amini (ISBI, 2011)

Validation of 3D ultra-short TE (UTE) Phase-Contrast MRI for imaging of steady flow: Initial phantom experiments. - Mo Kadbi; M. J. Negahdar; Jung won Cha; Melanie Traughber; Peter Martin; Amir A. Amini (EMBC, 2012)

A novel phase-corrected 3D cine ultra-short te (UTE) phase-contrast MRI technique. - Mo Kadbi; Hui Wang; M. J. Negahdar; Lizette Warner; Melanie Traughber; Peter Martin; Amir A. Amini (EMBC, 2012)

A biventricular multimodal (MRI/ultrasound) cardiac phantom. - Vahid Tavakoli; M. J. Negahdar; Michael Kendrick; Motaz Alshaher; Marcus F. Stoddard; Amir A. Amini (EMBC, 2012)

Regional lung strains via a volumetric mass conserving optical flow model. - Mohammadreza Negahdar; Amir A. Amini (ISBI, 2012)

Effect of Venc on accuracy of velocity profiles in multi-slice phase-contrast MR imaging of stenotic flow. - Mohammadreza Negahdar; Jong Cha; Mostafa Shakeri; Michael Kendrick; Motaz Alshaher; Iman Khodarahimi; M. K. Sharp; A. Yancey; J. Heidenreich; Amir A. Amini (ISBI, 2012)

Cardiac Motion and Deformation Recovery From MRI: A Review. - Hui Wang; Amir A. Amini (IEEE Trans. Medical Imaging, 2012)

Assessment of flow and hemodynamics in the carotid artery using a reduced TE 4D flow spiral phase-contrast MRI. - Mo Kadbi; Mohammadreza Negahdar; Melanie Traughber; Peter Martin; Amir A. Amini (EMBC, 2013)

Noninvasive 3D pressure calculation from PC-MRI via non-iterative harmonics-based orthogonal projection: Constant flow experiment. - M. J. Negahdar; Mo Kadbi; J. Cha; Juan R. Cebral; Amir A. Amini (EMBC, 2013)

Analysis of 3D cardiac deformations with 3D SinMod. - Hui Wang; Christian T. Stoeck; Sebastian Kozerke; Amir A. Amini (EMBC, 2013)

Comparison of indices of regional lung function from 4-D X-ray CT: Jacobian vs. strain of deformation. - Mohammadreza Negahdar; Neal Dunlap; Albert Zacarias; Ali Cahid Civelek; Shiao Y. Woo; Amir A. Amini (ISBI, 2013)

A survey of shaped-based registration and segmentation techniques for cardiac images. - Vahid Tavakoli; Amir A. Amini (Comput. Vis. Image Underst., 2013)

Tissue Doppler Imaging Optical Flow (TDIOF): A Combined B-Mode and Tissue Doppler Approach for Cardiac Motion Estimation in Echocardiographic Images. - Vahid Tavakoli; Nirman Bhatia; Rita A. Longaker; Marcus F. Stoddard; Amir A. Amini (IEEE Trans. Biomed. Eng., 2014)

4D lung tumor segmentation via shape prior and motion cues. - Jung won Cha; Mohammad Mehdi Farhangi; Neal Dunlap; Amir A. Amini (EMBC, 2016)

Incorporating shape prior into active contours with a sparse linear combination of training shapes: Application to corpus callosum segmentation. - Mohammad Mehdi Farhangi; Hichem Frigui; Robert Bert; Amir A. Amini (EMBC, 2016)

3D segmentation of lung CT data with graph-cuts: analysis of parameter sensitivities. - Jung won Cha; Neal Dunlap; Brian Wang; Amir A. Amini (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2016)

Volumetric analysis of respiratory gated whole lung and liver CT data with motion-constrained graph cuts segmentation. - Jung won Cha; Mohammad Mehdi Farhangi; Neal Dunlap; Amir A. Amini (EMBC, 2017)

3-D Active Contour Segmentation Based on Sparse Linear Combination of Training Shapes (SCoTS). - Mohammad Mehdi Farhangi; Hichem Frigui; Albert Seow; Amir A. Amini (IEEE Trans. Medical Imaging, 2017)

4D Dual-Venc Spiral Flow. - Sean Callahan; Alex Henn; Michael Kendrick; Hui Wang 105; M. J. Negahdar; Arash Kheradvar; Marcus F. Stoddard; Amir A. Amini (EMBC, 2018)

Statistical correlation of CT ventilation imaging and V/Q spect in patients with lung cancer. - Jung won Cha; Neal Dunlap; Amir A. Amini (ISBI, 2018)

3D segmentation of the ascending and descending aorta from CT data via graph-cuts. - Jungwon Cha; Alex Henn; Marcus F. Stoddard; Amir A. Amini (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2018)

Multiple Instance Learning for Malignant vs. Benign Classification of Lung Nodules in Thoracic Screening Ct Data. - Wiem Safta; Mohammad Mehdi Farhangi; Benjamin Veasey; Amir A. Amini; Hichem Frigui (ISBI, 2019)

An MR compatible aortic arch phantom with calcific polymeric valves. - Alex Henn; Sean Callahan; Michael Kendrick; Arash Kheradvar; Amir A. Amini (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2019)

A comparative study of graph search algorithms for segmenting coronary arteries from cine angiography. - Benjamin Veasey; Shahab Ghafghazi; Amir A. Amini (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2019)

Accelerated Phase Contrast Magnetic Resonance Imaging via Deep Learning. - Ruponti Nath; Sean Callahan; Narayana Singam; Marcus F. Stoddard; Amir A. Amini (ISBI, 2020)

Lung Nodule Malignancy Classification Based ON NLSTx Data. - Benjamin Veasey; Mohammad Mehdi Farhangi; Hichem Frigui; Justin Broadhead; Michael Dahle; Aria Pezeshk; Albert Seow; Amir A. Amini (ISBI, 2020)

3D U-Net for segmentation of pulmonary nodules in volumetric CT scans from multi-annotator truth estimation. - William Funke; Benjamin Veasey; Jacek M. Zurada; Hichem Frigui; Amir A. Amini (Computer-Aided Diagnosis, 2020)

Editorial Special Issue on "AI-Driven Informatics, Sensing, Imaging and Big Data Analytics for Fighting the COVID-19 Pandemic". - Amir A. Amini; Wei Chen 015; Giancarlo Fortino; Ye Li 002; Yi Pan 001; May Dongmei Wang (IEEE J. Biomed. Health Informatics, 2020)

AI in Medical Imaging Informatics: Current Challenges and Future Directions. - Andreas S. Panayides; Amir A. Amini; Nenad D. Filipovic; Ashish Sharma 001; Sotirios A. Tsaftaris; Alistair A. Young; David J. Foran; Nhan Do; Spyretta Golemati; Tahsin M. Kurç; Kun Huang 001; Konstantina S. Nikita; et al. (IEEE J. Biomed. Health Informatics, 2020)

Joint Learning for Deformable Registration and Malignancy Classification of Lung Nodules. - Aryan Ghazipour; Benjamin Veasey; Albert Seow; Amir A. Amini (ISBI, 2021)

4D flow MRI and CFD simulations of pulsatile flow in a phantom model of arterial stenosis: visualizing the vortex dynamics. - Amirkhosro Kazemi; Ruponti Nath; M. J. Negahdar; Marcus Stodddard; Amir A. Amini (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2021)

A 1D encoder-decoder deep network for pressure estimation from 4D flow MRI: in-vitro experiments. - Ruponti Nath; Amirkhosro Kazemi; Sean Callahan; M. J. Negahdar; Marcus F. Stoddard; Amir A. Amini (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2021)

3D U-net for registration of lung nodules in longitudinal CT scans. - Aryan Ghazipour; Benjamin Veasey; Albert Seow; Amir A. Amini (Computer-Aided Diagnosis, 2021)

Lung Nodule Malignancy Prediction in Sequential CT Scans: Summary of ISBI 2018 Challenge. - Yoganand Balagurunathan; Andrew Beers; Michael F. McNitt-Gray; Lubomir M. Hadjiiski; Sandy Napel; Dmitry B. Goldgof; Gustavo Pérez; Pablo Arbeláez; Alireza Mehrtash; Tina Kapur; Ehwa Yang; Jung Won Moon; et al. (IEEE Trans. Medical Imaging, 2021)

Reduced-order modeling of 4D flow MRI and CFD in stenotic flow using Proper Orthogonal Decomposition (POD) and Dynamic Mode Decomposition (DMD). - Amirkhosro Kazemi; Marcus F. Stoddard; Amir A. Amini (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2022)

FlowRAU-Net: Accelerated 4D Flow MRI of Aortic Valvular Flows With a Deep 2D Residual Attention Network. - Ruponti Nath; Sean Callahan; Marcus F. Stoddard; Amir A. Amini (IEEE Trans. Biomed. Eng., 2022)

Survival Outcome Prediction for Stereotactic Body Radiation Therapy of Lung Cancer from Post-RT Ct Images with RNN/CNN Deep Learning. - Aryan Ghazipour; Tyler Settle; Benjamin Veasey; Emily Daugherty; Samuel Keltner; Nitin Kumar 020; James Ververs; Michael Farris; Neal Dunlap; Amir A. Amini (ISBI, 2023)

TKE-Net: Deep Learning for Estimation of Super-Resolved Turbulent Kinetic Energy Maps from 4D-Flow MRI Data. - Amirkhosro Kazemi; Marcus F. Stoddard; Amir A. Amini (ISBI, 2023)

Estimation of hemodynamic parameters with deep-learning-based super-resolved 4D flow MRI velocity data. - Amirkhosro Kazemi; Sean Callahan; Marcus F. Stoddard; Amir A. Amini (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2023)

Performance of a bank of 2D efficient-nets for benign/malignant classification of lung nodules in 3D thoracic x-ray CT scans. - Tyler Settle; Benjamin Veasey; Albert Seow; Amir A. Amini (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2023)

PI-GNN: Physics-Informed Graph Neural Network for Super-Resolution of 4D Flow MRI. - Amirkhosro Kazemi; Isaac Josh Abecassis; Amir A. Amini (ISBI, 2024)

Parameter-Efficient Fine-Tuning of DINOV2 Vision Transformers for Lung Nodule Classification. - Benjamin Veasey; Amir A. Amini (ISBI, 2024)

Harnessing Convolutional Neural Networks for Diagnosing Post-SBRT Radiation-Induced Lung Injury From X-Ray CT. - Ben P. Veasey; Aryan Ghazipour; Tyler Settle; Emily C. Daugherty; Samuel Keltner; Nitin Kumar 020; James Ververs; Michael Farris; Neal Dunlap; Amir A. Amini (ISBI, 2024)