Structural diversity measures for RNA. - Amir H. Bayegan; Peter Clote (BCB, 2015)

New tools to analyze overlapping coding regions. - Amir H. Bayegan; Juan Antonio García-Martín; Peter Clote (BMC Bioinform., 2016)

RNAdualPF: software to compute the dual partition function with sample applications in molecular evolution theory. - Juan Antonio García-Martín; Amir H. Bayegan; Iván Dotú; Peter Clote (BMC Bioinform., 2016)

An IP Algorithm for RNA Folding Trajectories. - Amir H. Bayegan; Peter Clote (WABI, 2017)

Minimum length RNA folding trajectories. - Amir H. Bayegan; Peter Clote (CoRR, 2018)