Computational purification of tumor gene expression data. - Amit G. Deshwar; Gerald T. Quon; Quaid Morris (BMC Bioinform., 2011)

Modeling the Clonal Evolution of Cancer from Next Generation Sequencing Data - Wei Jiao; Shankar Vembu; Amit G. Deshwar; Lincoln Stein; Quaid Morris (CoRR, 2012)

PLIDA: cross-platform gene expression normalization using perturbed topic models. - Amit G. Deshwar; Quaid Morris (Bioinform., 2014)

Inferring clonal evolution of tumors from single nucleotide somatic mutations. - Wei Jiao; Shankar Vembu; Amit G. Deshwar; Lincoln Stein; Quaid Morris (BMC Bioinform., 2014)

Reconstructing subclonal composition and evolution from whole genome sequencing of tumors. - Amit G. Deshwar; Shankar Vembu; Christina K. Yung; Gun Ho Jang; Lincoln Stein; Quaid Morris (CoRR, 2014)

Comparing Nonparametric Bayesian Tree Priors for Clonal Reconstruction of Tumors. - Amit G. Deshwar; Shankar Vembu; Quaid Morris (Pacific Symposium on Biocomputing, 2015)

ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles. - Catalina V. Anghel; Gerald T. Quon; Syed Haider; Francis Nguyen; Amit G. Deshwar; Quaid Morris; Paul C. Boutros (BMC Bioinform., 2015)

Reconstructing evolutionary trajectories of mutations in cancer. - Yulia Rubanova; Ruian Shi; Roujia Li; Jeff Wintersinger; Amit G. Deshwar; Nil Sahin; Quaid Morris (ICLR (Workshop), 2018)

COSSMO: predicting competitive alternative splice site selection using deep learning. - Hannes Bretschneider; Shreshth Gandhi; Amit G. Deshwar; Khalid Zuberi; Brendan J. Frey (Bioinform., 2018)

The evolutionary history of 2,658 cancers. - Moritz Gerstung; Clemency Jolly; Ignaty Leshchiner; Stefan C. Dentro; Santiago Gonzalez; Thomas J. Mitchell; Yulia Rubanova; Pavana Anur; Kaixian Yu; Maxime Tarabichi; Amit G. Deshwar; Jeff Wintersinger; et al. (Nat., 2020)