An Evaluation of a Commercial CC-NUMA Architecture - The CONVEX Exemplar SPP1200. - Radhika Thekkath; Amit Pal Singh; Jaswinder Pal Singh; Susan John; John L. Hennessy (IPPS, 1997)

Hierarchical Protein Structure Superposition Using Both Secondary Structure and Atomic Representations. - Amit Pal Singh; Douglas L. Brutlag (ISMB, 1997)

A Motion Planning Approach to Flexible Ligand Binding. - Amit Pal Singh; Jean-Claude Latombe; Douglas L. Brutlag (ISMB, 1999)

Capturing Molecular Energy Landscapes with Probabilistic Conformational Roadmaps. - Mehmet Serkan Apaydin; Amit Pal Singh; Douglas L. Brutlag; Jean-Claude Latombe (ICRA, 2001)

Using robotics to fold proteins and dock ligands. - Douglas L. Brutlag; Mehmet Serkan Apaydin; Carlos Guestrin; David Hsu; Chris Varma; Amit Pal Singh; Jean-Claude Latombe (ECCB, 2002)