Efficient and Scalable Motif Discovery using Graph-based Search. - Amit U. Sinha; Raj Bhatnagar (CIBCB, 2007)

Identifying Functional Binding Motifs of Tumor Protein p53 Using Support Vector Machines. - Amit U. Sinha; Mukta Phatak; Raj Bhatnagar; Anil G. Jegga (ICMLA, 2007)

Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms. - Amit U. Sinha; Jaroslaw Meller (BMC Bioinform., 2007)

Sensitivity Analysis for Reversal Distance and Breakpoint Reuse in Genome Rearrangements. - Amit U. Sinha; Jaroslaw Meller (Pacific Symposium on Biocomputing, 2008)

eXframe: reusable framework for storage, analysis and visualization of genomics experiments. - Amit U. Sinha; Emily Merrill; Scott A. Armstrong; Timothy W. Clark; Sudeshna Das 001 (BMC Bioinform., 2011)