Intensity dependent estimation of noise in microarrays improves detection of differentially expressed genes. - Amit Zeisel; Amnon Amir; Wolfgang J. Köstler; Eytan Domany (BMC Bioinform., 2010)

Accurate Profiling of Microbial Communities from Massively Parallel Sequencing Using Convex Optimization. - Or Zuk; Amnon Amir; Amit Zeisel; Ohad Shamir; Noam Shental (SPIRE, 2013)

An accessible database for mouse and human whole transcriptome qPCR primers. - Amit Zeisel; Assif Yitzhaky; Noa Bossel Ben-Moshe; Eytan Domany (Bioinform., 2013)

RNA velocity of single cells. - Gioele La Manno; Ruslan A. Soldatov; Amit Zeisel; Emelie Braun; Hannah Hochgerner; Viktor Petukhov; Katja Lidschreiber; Maria E. Kastriti; Peter Lönnerberg; Alessandro Furlan; Jean Fan; Lars E. Borm; et al. (Nat., 2018)