Using propensity score adjustment method in genetic association studies. - Amrita Sengupta Chattopadhyay; Ying-Chao Lin; Ai-Ru Hsieh; Chien-Ching Chang; Ie-Bin Lian; Cathy S. J. Fann (Comput. Biol. Chem., 2016)

VariED: the first integrated database of gene annotation and expression profiles for variants related to human diseases. - Chien-Yueh Lee; Amrita Chattopadhyay; Li-Mei Chiang; Jyh-Ming Jimmy Juang; Liang-Chuan Lai; Mong-Hsun Tsai; Tzu-Pin Lu; Eric Y. Chuang (Database J. Biol. Databases Curation, 2019)

High-performance deep learning pipeline predicts individuals in mixtures of DNA using sequencing data. - Nam Nhut Phan; Amrita Chattopadhyay; Tsui-Ting Lee; Hsiang-I Yin; Tzu-Pin Lu; Liang-Chuan Lai; Hsiao-Lin Hwa; Mong-Hsun Tsai; Eric Y. Chuang (Briefings Bioinform., 2021)

CNVIntegrate: the first multi-ethnic database for identifying copy number variations associated with cancer. - Amrita Chattopadhyay; Zi Han Teoh; Chi-Yun Wu; Jyh-Ming Jimmy Juang; Liang-Chuan Lai; Mong-Hsun Tsai; Chia-Hsin Wu; Tzu-Pin Lu; Eric Y. Chuang (Database J. Biol. Databases Curation, 2021)

Transcript annotation tool (TransAT): an R package for retrieving annotations for transcript-specific genetic variants. - Ching-Yu Shih; Amrita Chattopadhyay; Chien-Hui Wu; Yu-Wen Tien; Tzu-Pin Lu (BMC Bioinform., 2021)

Join Classifier of Type and Index Mutation on Lung Cancer DNA Using Sequential Labeling Model. - Untari Novia Wisesty; Ayu Purwarianti; Adi Pancoro; Amrita Chattopadhyay; Nam Nhut Phan; Eric Y. Chuang; Tati Rajab Mengko (IEEE Access, 2022)

CLIN_SKAT: an R package to conduct association analysis using functionally relevant variants. - Amrita Chattopadhyay; Ching-Yu Shih; Yu-Chen Hsu; Jyh-Ming Jimmy Juang; Eric Y. Chuang; Tzu-Pin Lu (BMC Bioinform., 2022)

Multi-ethnic Imputation System (MI-System): A genotype imputation server for high-dimensional data. - Amrita Chattopadhyay; Chien-Yueh Lee; Ying-Cheng Shen; Kuan-Chen Lu; Tzu-Hung Hsiao; Ching-Heng Lin; Liang-Chuan Lai; Mong-Hsun Tsai; Tzu-Pin Lu; Eric Y. Chuang (J. Biomed. Informatics, 2023)

Cross-population enhancement of PrediXcan predictions with a gnomAD-based east Asian reference framework. - Han-Ching Chan; Amrita Chattopadhyay; Tzu-Pin Lu (Briefings Bioinform., 2024)