The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction. - Curtis Huttenhower; Matthew A. Hibbs; Chad L. Myers; Amy A. Caudy; David C. Hess; Olga G. Troyanskaya (Bioinform., 2009)

Predicting Cellular Growth from Gene Expression Signatures. - Edoardo M. Airoldi; Curtis Huttenhower; David Gresham; Charles Lu 004; Amy A. Caudy; Maitreya J. Dunham; James R. Broach; David Botstein; Olga G. Troyanskaya (PLoS Comput. Biol., 2009)

Directing Experimental Biology: A Case Study in Mitochondrial Biogenesis. - Matthew A. Hibbs; Chad L. Myers; Curtis Huttenhower; David C. Hess; Kai Li 001; Amy A. Caudy; Olga G. Troyanskaya (PLoS Comput. Biol., 2009)

Systematic Planning of Genome-Scale Experiments in Poorly Studied Species. - Yuanfang Guan; Maitreya J. Dunham; Amy A. Caudy; Olga G. Troyanskaya (PLoS Comput. Biol., 2010)