A Novel Ensemble-Based Scoring and Search Algorithm for Protein Redesign and Its Application to Modify the Substrate Specificity of the Gramicidin Synthetase A Phenylalanine Adenylation Enzyme. - Ryan H. Lilien; Brian W. Stevens; Amy C. Anderson; Bruce Randall Donald (J. Comput. Biol., 2005)

Scoring Ensembles of Docked Protein: Ligand Interactions for Virtual Lead Optimization. - Janet L. Paulsen; Amy C. Anderson (J. Chem. Inf. Model., 2009)