The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications. - J. Christopher Bare; Paul T. Shannon; Amy K. Schmid; Nitin S. Baliga (BMC Bioinform., 2007)

Clustering gene expression time series data using an infinite Gaussian process mixture model. - Ian C. McDowell; Dinesh Manandhar; Christopher M. Vockley; Amy K. Schmid; Timothy E. Reddy; Barbara E. Engelhardt (PLoS Comput. Biol., 2018)

A Bayesian non-parametric mixed-effects model of microbial growth curves. - Peter D. Tonner; Cynthia L. Darnell; Francesca M. L. Bushell; Peter A. Lund; Amy K. Schmid; Scott C. Schmidler (PLoS Comput. Biol., 2020)