Additional limitations of the clustering validation method figure of merit. - Amy L. Olex; David J. John; Elizabeth M. Hiltbold; Jacquelyn S. Fetrow (ACM Southeast Regional Conference, 2007)

SC2ATmd: a tool for integration of the figure of merit with cluster analysis for gene expression data. - Amy L. Olex; Jacquelyn S. Fetrow (Bioinform., 2011)

Parsing MetaMap Files in Hadoop. - Amy L. Olex; Alberto Cano 001; Bridget T. McInnes (AMIA, 2017)

Chrono at SemEval-2018 Task 6: A System for Normalizing Temporal Expressions. - Amy L. Olex; Luke Maffey; Nicholas Morgan; Bridget T. McInnes (SemEval@NAACL-HLT, 2018)

TAC SRIE 2018: Extracting Systematic Review Information with MedaCy. - Andriy Mulyar; Darshini Mahendran; Luke Maffey; Amy L. Olex; Grant Matteo; Neha Dill; Nastassja Lewinski; Bridget T. McInnes (TAC, 2018)

Untapped Potential of Clinical Text for Opioid Surveillance. - Amy L. Olex; Tamás Gál; Majid Afshar; Dmitriy Dligach; Niranjan S. Karnik; Travis Oakes; Brihat Sharma; Meng Xie; Bridget T. McInnes; Julian Solway; Abel N. Kho; William Cramer; et al. (AMIA, 2019)

NLP Whack-A-Mole: Challenges in Cross-Domain Temporal Expression Extraction. - Amy L. Olex; Luke Maffey; Bridget T. McInnes (NAACL-HLT (1), 2019)

Review of Temporal Reasoning in the Clinical Domain for Timeline Extraction: Where we are and where we need to be. - Amy L. Olex; Bridget T. McInnes (J. Biomed. Informatics, 2021)

TopEx: topic exploration of COVID-19 corpora - Results from the BioCreative VII Challenge Track 4. - Amy L. Olex; Evan French; Peter Burdette; Srilakshmi Sagiraju; Thomas Neumann 012; Tamas S. Gal; Bridget T. McInnes (Database J. Biol. Databases Curation, 2022)

Temporal disambiguation of relative temporal expressions in clinical texts. - Amy L. Olex; Bridget T. McInnes (Frontiers Res. Metrics Anal., 2022)