Comparative study of various normal mode analysis techniques based on partial Hessians. - An Ghysels; Veronique Van Speybroeck; Ewald Pauwels; Saron Catak; Bernard R. Brooks; Dimitri Van Neck; Michel Waroquier (J. Comput. Chem., 2010)

TAMkin: A Versatile Package for Vibrational Analysis and Chemical Kinetics. - An Ghysels; Toon Verstraelen; Karen Hemelsoet; Michel Waroquier; Veronique Van Speybroeck (J. Chem. Inf. Model., 2010)

Comparing normal modes across different models and scales: Hessian reduction versus coarse-graining. - An Ghysels; Benjamin T. Miller; Frank C. Pickard IV; Bernard R. Brooks (J. Comput. Chem., 2012)

Capric Acid and Myristic Acid Permeability Enhancers in Curved Liposome Membranes. - Samaneh Davoudi; Koen Raemdonck; Kevin Braeckmans; An Ghysels (J. Chem. Inf. Model., 2023)

PyRETIS 3: Conquering rare and slow events without boundaries. - Wouter Vervust; Daniel T. Zhang; An Ghysels; Sander Roet; Titus S. van Erp; Enrico Riccardi (J. Comput. Chem., 2024)