Reconstruction of metabolic and regulatory networks of Klebsiella pneumoniae from genome data. - J. Sun; Joop van den Heuvel; An-Ping Zeng 001 (German Conference on Bioinformatics, 2001)

Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms. - Hongwu Ma; An-Ping Zeng 001 (Bioinform., 2003)

The Connectivity Structure, Giant Strong Component and Centrality of Metabolic Networks. - Hongwu Ma; An-Ping Zeng 001 (Bioinform., 2003)

Decomposition of metabolic network into functional modules based on the global connectivity structure of reaction graph. - Hongwu Ma; Xue-Ming Zhao; Ying-Jin Yuan; An-Ping Zeng 001 (Bioinform., 2004)

Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach. - Hongwu Ma; Jan Buer; An-Ping Zeng 001 (BMC Bioinform., 2004)

IdentiCS - Identification of coding sequence and in silico reconstruction of the metabolic network directly from unannotated low-coverage bacterial genome sequence. - Jibin Sun; An-Ping Zeng 001 (BMC Bioinform., 2004)

In search of functional association from time-series microarray data based on the change trend and level of gene expression. - Feng He 002; An-Ping Zeng 001 (BMC Bioinform., 2006)

A cybernetic model to describe the dynamics of myeloma cell cultivations. - Yuan-Hua Liu; Jing-Xiu Bi; An-Ping Zeng 001; Jing-Qi Yuan (Appl. Math. Comput., 2008)

Centrality, Network Capacity, and Modularity as Parameters to Analyze the Core-Periphery Structure in Metabolic Networks. - Marcio Rosa da Silva; Hongwu Ma; An-Ping Zeng 001 (Proc. IEEE, 2008)

Non-stationary 13C metabolic flux analysis of Chinese hamster ovary cells in batch culture using extracellular labeling highlights metabolic reversibility and compartmentation. - Averina Nicolae; Judith Wahrheit; Janina Bahnemann; An-Ping Zeng 001; Elmar Heinzle (BMC Syst. Biol., 2014)

Full Enzyme Complex Simulation: Interactions in Human Pyruvate Dehydrogenase Complex. - Samira Hezaveh; An-Ping Zeng 001; Uwe Jandt (J. Chem. Inf. Model., 2018)

Toward Multiscale Modeling of Proteins and Bioagglomerates: An Orientation-Sensitive Diffusion Model for the Integration of Molecular Dynamics and the Discrete Element Method. - Philipp Nicolas Depta; Uwe Jandt; Maksym Dosta; An-Ping Zeng 001; Stefan Heinrich (J. Chem. Inf. Model., 2019)

Optimising bioreactor processes with in-situ product removal using mathematical programming: A case study for propionate production. - Lucas Van der Hauwaert; Alberte Regueira; Ludwig Selder; An-Ping Zeng 001; Miguel Mauricio-Iglesias (Comput. Chem. Eng., 2022)

MetaEnzyme: Meta Pan-Enzyme Learning for Task-Adaptive Redesign. - Jiangbin Zheng 002; Han Zhang; Qianqing Xu; An-Ping Zeng 001; Stan Z. Li (ACM Multimedia, 2024)