ERGR: An ethanol-related gene resource. - An-Yuan Guo; Bradley Todd Webb; Michael F. Miles; Mark P. Zimmerman; Kenneth S. Kendler; Zhongming Zhao (Nucleic Acids Res., 2009)

A Novel microRNA and transcription factor mediated regulatory network in schizophrenia. - An-Yuan Guo; Jingchun Sun; Peilin Jia; Zhongming Zhao (BMC Syst. Biol., 2010)

CADgene: a comprehensive database for coronary artery disease genes. - Hui Liu; Wei Liu 032; Yifang Liao; Long Cheng; Qian Liu; Xiang Ren; Lisong Shi; Xin Tu; Qing Kenneth Wang; An-Yuan Guo (Nucleic Acids Res., 2011)

miRNASNP: a database of miRNA related SNPs and their effects on miRNA function. - Jing Gong; Yin Tong; Hong-Mei Zhang 008; An-Yuan Guo (BMC Bioinform., 2012)

AnimalTFDB: a comprehensive animal transcription factor database. - Hong-Mei Zhang 008; Hu Chen; Wei Liu 032; Hui Liu; Jing Gong; Huili Wang; An-Yuan Guo (Nucleic Acids Res., 2012)

Transcription factor and microRNA co-regulatory loops: important regulatory motifs in biological processes and diseases. - Hong-Mei Zhang 008; Shuzhen Kuang; Xushen Xiong; Tianliuyun Gao; Chenglin Liu; An-Yuan Guo (Briefings Bioinform., 2015)

An update of miRNASNP database for better SNP selection by GWAS data, miRNA expression and online tools. - Jing Gong; Chun-Jie Liu; Wei Liu 032; Yuliang Wu; Zhaowu Ma; Hu Chen; An-Yuan Guo (Database J. Biol. Databases Curation, 2015)

lncRNASNP: a database of SNPs in lncRNAs and their potential functions in human and mouse. - Jing Gong; Wei Liu 032; Jiayou Zhang; Xiaoping Miao; An-Yuan Guo (Nucleic Acids Res., 2015)

AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors. - Hong-Mei Zhang 008; Teng Liu; Chun-Jie Liu; Shuangyang Song; Xiantong Zhang; Wei Liu 032; Haibo Jia; Yu Xue 001; An-Yuan Guo (Nucleic Acids Res., 2015)

LNCediting: a database for functional effects of RNA editing in lncRNAs. - Jing Gong; Chun-Jie Liu; Wei Liu 032; Yu Xiang; Lixia Diao; An-Yuan Guo; Leng Han (Nucleic Acids Res., 2017)

SEGtool: a specifically expressed gene detection tool and applications in human tissue and single-cell sequencing data. - Qiong Zhang; Wei Liu 032; Chun-Jie Liu; Sheng-Yan Lin; An-Yuan Guo (Briefings Bioinform., 2018)

GSCALite: a web server for gene set cancer analysis. - Chun-Jie Liu; Fei-Fei Hu; Meng-Xuan Xia; Leng Han; Qiong Zhang; An-Yuan Guo (Bioinform., 2018)

PancanQTL: systematic identification of cis-eQTLs and trans-eQTLs in 33 cancer types. - Jing Gong; Shufang Mei; Chun-Jie Liu; Yu Xiang; Youqiong Ye; Zhao Zhang; Jing Feng 005; Renyan Liu; Lixia Diao; An-Yuan Guo; Xiaoping Miao; Leng Han (Nucleic Acids Res., 2018)

lncRNASNP2: an updated database of functional SNPs and mutations in human and mouse lncRNAs. - Ya-Ru Miao; Wei Liu 032; Qiong Zhang; An-Yuan Guo (Nucleic Acids Res., 2018)

SEGreg: a database for human specifically expressed genes and their regulations in cancer and normal tissue. - Qin Tang; Qiong Zhang; Yao Lv; Ya-Ru Miao; An-Yuan Guo (Briefings Bioinform., 2019)

Transcriptome and Regulatory Network Analyses of CD19-CAR-T Immunotherapy for B-ALL. - Qiong Zhang; Hui Hu; Si-Yi Chen; Chun-Jie Liu; Fei-Fei Hu; Jianming Yu; Yaohui Wu; An-Yuan Guo (Genom. Proteom. Bioinform., 2019)

Pancan-meQTL: a database to systematically evaluate the effects of genetic variants on methylation in human cancer. - Jing Gong; Hao Wan; Shufang Mei; Hang Ruan; Zhao Zhang; Chun-Jie Liu; An-Yuan Guo; Lixia Diao; Xiaoping Miao; Leng Han (Nucleic Acids Res., 2019)

AnimalTFDB 3.0: a comprehensive resource for annotation and prediction of animal transcription factors. - Hui Hu; Ya-Ru Miao; Long-Hao Jia; Qing-Yang Yu; Qiong Zhang; An-Yuan Guo (Nucleic Acids Res., 2019)

EVmiRNA: a database of miRNA profiling in extracellular vesicles. - Teng Liu; Qiong Zhang; Jiankun Zhang; Chao Li; Ya-Ru Miao; Qian Lei; Qiubai Li; An-Yuan Guo (Nucleic Acids Res., 2019)

SAGD: a comprehensive sex-associated gene database from transcriptomes. - Meng-Wei Shi; Na-An Zhang; Chuan-Ping Shi; Chun-Jie Liu; Zhi-Hui Luo; Dan-Yang Wang; An-Yuan Guo; Zhen-Xia Chen (Nucleic Acids Res., 2019)

Landscape of cancer diagnostic biomarkers from specifically expressed genes. - Yao Lv; Sheng-Yan Lin; Fei-Fei Hu; Zheng Ye; Qiong Zhang; Yan Wang; An-Yuan Guo (Briefings Bioinform., 2020)

An ultra-sensitive T-cell receptor detection method for TCR-Seq and RNA-Seq data. - Si-Yi Chen; Chun-Jie Liu; Qiong Zhang; An-Yuan Guo (Bioinform., 2020)

FFLtool: a web server for transcription factor and miRNA feed forward loop analysis in human. - Gui-Yan Xie; Meng-Xuan Xia; Ya-Ru Miao; Mei Luo; Qiong Zhang; An-Yuan Guo (Bioinform., 2020)

hTFtarget: A Comprehensive Database for Regulations of Human Transcription Factors and Their Targets. - Qiong Zhang; Wei Liu 032; Hong-Mei Zhang 008; Gui-Yan Xie; Ya-Ru Miao; Meng-Xuan Xia; An-Yuan Guo (Genom. Proteom. Bioinform., 2020)

SNP2APA: a database for evaluating effects of genetic variants on alternative polyadenylation in human cancers. - Yanbo Yang; Qiong Zhang; Ya-Ru Miao; Jiajun Yang; Wenqian Yang; Fangda Yu; Dongyang Wang; An-Yuan Guo; Jing Gong (Nucleic Acids Res., 2020)

Expression profile of immune checkpoint genes and their roles in predicting immunotherapy response. - Fei-Fei Hu; Chun-Jie Liu; Lan-Lan Liu; Qiong Zhang; An-Yuan Guo (Briefings Bioinform., 2021)

A comprehensive survey for human transcription factors on expression, regulation, interaction, phenotype and cancer survival. - Hui Hu; Qiong Zhang; Fei-Fei Hu; Chun-Jie Liu; An-Yuan Guo (Briefings Bioinform., 2021)

CCLA: an accurate method and web server for cancer cell line authentication using gene expression profiles. - Qiong Zhang; Mei Luo; Chun-Jie Liu; An-Yuan Guo (Briefings Bioinform., 2021)

TCRdb: a comprehensive database for T-cell receptor sequences with powerful search function. - Si-Yi Chen; Tao Yue; Qian Lei; An-Yuan Guo (Nucleic Acids Res., 2021)

miRNASNP-v3: a comprehensive database for SNPs and disease-related variations in miRNAs and miRNA targets. - Chun-Jie Liu; Xin Fu; Meng-Xuan Xia; Qiong Zhang; Zhifeng Gu; An-Yuan Guo (Nucleic Acids Res., 2021)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Shuhui Song; Lina Ma; et al. (Nucleic Acids Res., 2021)

EVAtool: an optimized reads assignment tool for small ncRNA quantification and its application in extracellular vesicle datasets. - Gui-Yan Xie; Chun-Jie Liu; An-Yuan Guo (Briefings Bioinform., 2022)

ImmuCellAI-mouse: a tool for comprehensive prediction of mouse immune cell abundance and immune microenvironment depiction. - Ya-Ru Miao; Meng-Xuan Xia; Mei Luo; Tao Luo; Mei Yang; An-Yuan Guo (Bioinform., 2022)

EVAtlas: a comprehensive database for ncRNA expression in human extracellular vesicles. - Chun-Jie Liu; Gui-Yan Xie; Ya-Ru Miao; Meng-Xuan Xia; Yi Wang; Qian Lei; Qiong Zhang; An-Yuan Guo (Nucleic Acids Res., 2022)

GSCA: an integrated platform for gene set cancer analysis at genomic, pharmacogenomic and immunogenomic levels. - Chun-Jie Liu; Fei-Fei Hu; Gui-Yan Xie; Ya-Ru Miao; Xin-Wen Li; Yan Zeng; An-Yuan Guo (Briefings Bioinform., 2023)

AnimalTFDB 4.0: a comprehensive animal transcription factor database updated with variation and expression annotations. - Wen-Kang Shen; Si-Yi Chen; Zi-Quan Gan; Yu-Zhu Zhang; Tao Yue; Miaomiao Chen; Yu Xue 001; Hui Hu; An-Yuan Guo (Nucleic Acids Res., 2023)

lncRNASNP v3: an updated database for functional variants in long non-coding RNAs. - Yanbo Yang; Dongyang Wang; Ya-Ru Miao; Xiaohong Wu; Haohui Luo; Wen Cao; Wenqian Yang; Jianye Yang 002; An-Yuan Guo; Jing Gong (Nucleic Acids Res., 2023)

ICBcomb: a comprehensive expression database for immune checkpoint blockade combination therapy. - Yun Xia; Yan Gao; Ming-Yu Liu 003; Lei Li; Wen Pan; Ling-Zi Mao; Zhongzheng Yang; Mei Yang; An-Yuan Guo (Briefings Bioinform., 2024)

TCRosetta: An Integrated Analysis and Annotation Platform for T-cell Receptor Sequences. - Tao Yue; Si-Yi Chen; Wen-Kang Shen; Zhan-Ye Zhang; Liming Cheng; An-Yuan Guo (Genom. Proteom. Bioinform., 2024)

TcEVdb: a database for T-cell-derived small extracellular vesicles from single-cell transcriptomes. - Tao Luo; Wen-Kang Shen; Chu-Yu Zhang; Dan-Dan Song; Xiu-Qing Zhang; An-Yuan Guo; Qian Lei (Database J. Biol. Databases Curation, 2025)