miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments. - Michael Hackenberg; Martin Sturm; David Langenberger; Juan Manuel Falcón-Pérez; Ana M. Aransay (Nucleic Acids Res., 2009)

miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments. - Michael Hackenberg; Naiara Rodríguez-Ezpeleta; Ana M. Aransay (Nucleic Acids Res., 2011)

Comparison of methods to detect copy number alterations in cancer using simulated and real genotyping data. - David Mosén-Ansorena; Ana M. Aransay; Naiara Rodríguez-Ezpeleta (BMC Bioinform., 2012)

Bivariate segmentation of SNP-array data for allele-specific copy number analysis in tumour samples. - David Mosén-Ansorena; Ana María Aransay (BMC Bioinform., 2013)

VerSeDa: vertebrate secretome database. - Ana Rosa Cortázar; José A. Oguiza; Ana M. Aransay; José Luis Lavín (Database J. Biol. Databases Curation, 2017)

Cluster Locator, online analysis and visualization of gene clustering. - Flavio Pazos Obregón; Pablo Soto; José Luis Lavín; Ana Rosa Cortázar; Rosa Barrio; Ana María Aransay; Rafael Cantera (Bioinform., 2018)