ProPythia: A Python Automated Platform for the Classification of Proteins Using Machine Learning. - Ana Marta Sequeira; Diana Lousa; Miguel Rocha 001 (PACBB, 2020)

Recurrent Deep Neural Networks for Enzyme Functional Annotation. - Ana Marta Sequeira; Miguel Rocha 001 (PACBB, 2021)

ProPythia: A Python package for protein classification based on machine and deep learning. - Ana Marta Sequeira; Diana Lousa; Miguel Rocha 001 (Neurocomputing, 2022)

Word embeddings for protein sequence analysis. - Ana Marta Sequeira; Ivan Gomes; Miguel Rocha 001 (CIBCB, 2023)