HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding. - Hosna Jabbari; Anne Condon; Ana Pop; Cristina Pop 004; Yinglei Zhao (WABI, 2007)

Integrated functional networks of process, tissue, and developmental stage specific interactions in Arabidopsis thaliana. - Ana Pop; Curtis Huttenhower; Anjali Iyer-Pascuzzi; Philip N. Benfey; Olga G. Troyanskaya (BMC Syst. Biol., 2010)

Integrating genomic data to build networks for proteins and small molecules - Ana Pop (2013)