The metabolic pH response in Lactococcus lactis: An integrative experimental and modelling approach. - Ann Zahle Andersen; Ana Lúcia Carvalho; Ana Rute Neves; Helena Santos; Ursula Kummer; Lars Folke Olsen (Comput. Biol. Chem., 2009)

Multi-level Dynamic Modeling in Biological Systems - Application of Hybrid Petri Nets to Network Simulation. - Rafael S. Costa; Daniel Machado; Ana Rute Neves; Susana Vinga (BIOINFORMATICS, 2012)

MARSI: metabolite analogues for rational strain improvement. - João G. R. Cardoso; Ahmad A. Zeidan; Kristian Jensen; Nikolaus Sonnenschein; Ana Rute Neves; Markus J. Herrgård (Bioinform., 2018)