Agent-Based Knowledge Extraction Services Inside Enterprise Data Warehousing Systems Environments. - Anália Lourenço; Joaquim Gonçalves; Orlando Belo (DEXA Workshop, 2001)

Specializing Agents on Data Integration in Data Warehousing System Environment. - Joaquim Gonçalves; Anália Lourenço; Orlando Belo (ICEIS (1), 2001)

Broadband access technologies. - Jose Velez; Anália Lourenço; Cristina Pechirra; Leonor Almeida (Workshop on Universal Accessibility of Ubiquitous Computing, 2001)

Assessing Web Usage Profiles. - Anália Lourenço; Orlando Belo (ICWI, 2003)

Utilização de Agentes na Identificação e Resolução de Situações Anómales em Processos de Povoamento de Data Warehouses. - Anália Lourenço; Orlando Belo (JISBD, 2003)

Attenuating the Effect of Data Abnormalities on Data Warehouses. - Anália Lourenço; Orlando Belo (ICEIS (1), 2004)

Applying Clickstream Data Mining to Real-Time Web Crawler Detection and Containment Using ClickTips Platform. - Anália Lourenço; Orlando Belo (GfKl, 2006)

Catching web crawlers in the act. - Anália Lourenço; Orlando Belo (ICWE, 2006)

A framework for the development of Biomedical Text Mining software tools. - Anália Lourenço; Rafael Carreira; Sónia Carneiro; Paulo Maia; Daniel Glez-Peña; Florentino Fdez-Riverola; Eugénio C. Ferreira; Isabel Rocha; Miguel Rocha 001 (BIBE, 2008)

A framework for the integrated analysis of metabolic and regulatory networks. - Rui Mendes 001; Anália Lourenço; Sónia Carneiro; Miguel Rocha 001; Isabel Rocha; Eugénio C. Ferreira (BIBE, 2008)

Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis. - José P. Pinto; Oscar Dias; Anália Lourenço; Sónia Carneiro; Eugénio C. Ferreira; Isabel Rocha; Miguel Rocha 001 (IWPACBB, 2008)

Biomedical Text Mining Applied to Document Retrieval and Semantic Indexing. - Anália Lourenço; Sónia Carneiro; Eugénio C. Ferreira; Rafael Carreira; Luis M. Rocha; Daniel Glez-Peña; José Ramón Méndez 001; Florentino Fdez-Riverola; Fernando Díaz 001; Isabel Rocha; Miguel Rocha 001 (IWANN (2), 2009)

@Note: A workbench for Biomedical Text Mining. - Anália Lourenço; Rafael Carreira; Sónia Carneiro; Paulo Maia; Daniel Glez-Peña; Florentino Fdez-Riverola; Eugénio C. Ferreira; Isabel Rocha; Miguel Rocha 001 (J. Biomed. Informatics, 2009)

BioDR: Semantic indexing networks for biomedical document retrieval. - Anália Lourenço; Rafael Carreira; Daniel Glez-Peña; José Ramón Méndez 001; Sónia Carneiro; Luis Mateus Rocha; Fernando Díaz 001; Eugénio C. Ferreira; Isabel Rocha; Florentino Fdez-Riverola; Miguel Rocha 001 (Expert Syst. Appl., 2010)

Interpreting the Regulatory Interplay in E. coli Metabolic Pathways. - Anália Lourenço; Sónia Carneiro; José P. Pinto; Miguel Rocha 001; Eugénio C. Ferreira; Isabel Rocha (PACBB, 2011)

Challenges in integrating Escherichia coli molecular biology data. - Anália Lourenço; Sónia Carneiro; Miguel Rocha 001; Eugénio C. Ferreira; Isabel Rocha (Briefings Bioinform., 2011)

Semantic annotation of biological concepts interplaying microbial cellular responses. - Rafael Carreira; Sónia Carneiro; Rui Pereira; Miguel Rocha 001; Isabel Rocha; Eugénio C. Ferreira; Anália Lourenço (BMC Bioinform., 2011)

A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature. - Anália Lourenço; Michael D. Conover; Andrew Wong; Azadeh Nematzadeh; Fengxia Pan; Hagit Shatkay; Luis M. Rocha (BMC Bioinform., 2011)

A Study of the Short and Long-term Regulation of E. coli Metabolic Pathways. - Anália Lourenço; Sónia Carneiro; José P. Pinto; Miguel Rocha 001; Eugénio C. Ferreira; Isabel Rocha (J. Integr. Bioinform., 2011)

A Systematic Approach to the Interrogation and Sharing of Standardised Biofilm Signatures. - Anália Lourenço; Andreia Ferreira; Maria Olívia Pereira; Nuno F. Azevedo (PACBB, 2012)

SAD_BaSe: A Blood Bank Data Analysis Software. - Augusto Ramoa; Salomé Maia; Anália Lourenço (PACBB, 2012)

MorphoCol: A Powerful Tool for the Clinical Profiling of Pathogenic Bacteria. - Ana Margarida Sousa; Anália Lourenço; Maria Olívia Pereira (PACBB, 2012)

Text mining for the biocuration workflow. - Lynette Hirschman; Gully A. P. C. Burns; Martin Krallinger; Cecilia N. Arighi; K. Bretonnel Cohen; Alfonso Valencia; Cathy H. Wu; Andrew Chatr-aryamontri; Karen G. Dowell; Eva Huala; Anália Lourenço; Robert S. Nash; et al. (Database J. Biol. Databases Curation, 2012)

Correction: A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature. - Anália Lourenço; Michael D. Conover; Andrew Wong; Azadeh Nematzadeh; Fengxia Pan; Hagit Shatkay; Luis M. Rocha (BMC Bioinform., 2012)

A Rational Framework for Production Decision Making in Blood Establishments. - Augusto Ramoa; Salomé Maia; Anália Lourenço (J. Integr. Bioinform., 2012)

Computational approaches to standard-compliant biofilm data for reliable analysis and integration. - Ana Margarida Sousa; Andreia Ferreira; Nuno F. Azevedo; Maria Olívia Pereira; Anália Lourenço (J. Integr. Bioinform., 2012)

Evaluation of Linear Classifiers on Articles Containing Pharmacokinetic Evidence of Drug-Drug Interactions. - Artemy Kolchinsky; Anália Lourenço; Lang Li 001; Luis M. Rocha (Pacific Symposium on Biocomputing, 2013)

Evaluating Web Site Structure Based on Navigation Profiles and Site Topology. - Alberto Simões 001; Anália Lourenço; José João Almeida (WorldCIST, 2013)

Bringing Named Entity Recognition on Drupal Content Management System. - José Ferrnandes; Anália Lourenço (PACBB, 2014)

Networking the Way towards Antimicrobial Combination Therapies. - Paula Jorge; Maria Olívia Pereira; Anália Lourenço (PACBB, 2014)

Marky: A Lightweight Web Tracking Tool for Document Annotation. - Martín Pérez-Pérez; Daniel Glez-Peña; Florentino Fdez-Riverola; Anália Lourenço (PACBB, 2014)

BEW: Bioinformatics Workbench for Analysis of Biofilms Experimental Data. - Gael Pérez Rodríguez; Daniel Glez-Peña; Nuno F. Azevedo; Maria Olívia Pereira; Florentino Fdez-Riverola; Anália Lourenço (PACBB, 2014)

Designing an Ontology Tool for the Unification of Biofilms Data. - Ana Margarida Sousa; Maria Olívia Pereira; Nuno F. Azevedo; Anália Lourenço (PACBB, 2014)

Web scraping technologies in an API world. - Daniel Glez-Peña; Anália Lourenço; Hugo López-Fernández; Miguel Reboiro-Jato; Florentino Fdez-Riverola (Briefings Bioinform., 2014)

Extraction of Pharmacokinetic Evidence of Drug-drug Interactions from the Literature. - Artemy Kolchinsky; Anália Lourenço; Heng-Yi Wu; Lang Li 001; Luis M. Rocha (CoRR, 2014)

An harmonised vocabulary for communicating and interchanging Biofilms experimental results. - Ana Margarida Sousa; Maria Olívia Pereira; Nuno F. Azevedo; Anália Lourenço (J. Integr. Bioinform., 2014)

A Novel Search Engine Supporting Specific Drug Queries and Literature Management. - Alberto G. Jácome; Florentino Fdez-Riverola; Anália Lourenço (PACBB, 2015)

Pathogenicity phenomena in three model systems: from network mining to emerging system-level properties. - Nadine Castelhano Santos; Maria Olívia Pereira; Anália Lourenço (Briefings Bioinform., 2015)

Marky: A tool supporting annotation consistency in multi-user and iterative document annotation projects. - Martín Pérez-Pérez; Daniel Glez-Peña; Florentino Fdez-Riverola; Anália Lourenço (Comput. Methods Programs Biomed., 2015)

Enabling systematic, harmonised and large-scale biofilms data computation: The Biofilms Experiment Workbench. - Gael Pérez Rodríguez; Daniel Glez-Peña; Nuno F. Azevedo; Maria Olívia Pereira; Florentino Fdez-Riverola; Anália Lourenço (Comput. Methods Programs Biomed., 2015)

MorphoCol: An ontology-based knowledgebase for the characterisation of clinically significant bacterial colony morphologies. - Ana Margarida Sousa; Maria Olívia Pereira; Anália Lourenço (J. Biomed. Informatics, 2015)

Computational resources and strategies to construct single-molecule metabolic models of microbial cells. - Denise Gameiro; Martín Pérez-Pérez; Gael Pérez Rodríguez; Gonçalo Monteiro; Nuno F. Azevedo; Anália Lourenço (Briefings Bioinform., 2016)

Construction of antimicrobial peptide-drug combination networks from scientific literature based on a semi-automated curation workflow. - Paula Jorge; Martín Pérez-Pérez; Gael Pérez Rodríguez; Florentino Fdez-Riverola; Maria Olívia Pereira; Anália Lourenço (Database J. Biol. Databases Curation, 2016)

The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge. - Martín Pérez-Pérez; Gael Pérez Rodríguez; Obdulia Rabal; Miguel Vazquez; Julen Oyarzabal; Florentino Fdez-Riverola; Alfonso Valencia; Martin Krallinger; Anália Lourenço (Database J. Biol. Databases Curation, 2016)

BIOMedical Search Engine Framework: Lightweight and customized implementation of domain-specific biomedical search engines. - Alberto G. Jácome; Florentino Fdez-Riverola; Anália Lourenço (Comput. Methods Programs Biomed., 2016)

Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets. - Aitor Blanco-Míguez; Jan P. Meier-Kolthoff; Alberto Gutiérrez-Jácome; Markus Göker; Florentino Fdez-Riverola; Borja Sánchez; Anália Lourenço (PLoS Comput. Biol., 2016)

The Biomedical Abbreviation Recognition and Resolution (BARR) Track: Benchmarking, Evaluation and Importance of Abbreviation Recognition Systems Applied to Spanish Biomedical Abstracts. - Ander Intxaurrondo; Martín Pérez-Pérez; Gael Pérez Rodríguez; Jose Antonio López-Martín; Jesus Santamaría; Santiago de la Peña; Marta Villegas; Saber Ahmad Akhondi; Alfonso Valencia; Anália Lourenço; Martin Krallinger (IberEval@SEPLN, 2017)

MAHMI database: a comprehensive MetaHit-based resource for the study of the mechanism of action of the human microbiota. - Aitor Blanco-Míguez; Alberto Gutiérrez-Jácome; Florentino Fdez-Riverola; Anália Lourenço; Borja Sánchez (Database J. Biol. Databases Curation, 2017)

Collaborative relation annotation and quality analysis in Markyt environment. - Martín Pérez-Pérez; Gael Pérez Rodríguez; Florentino Fdez-Riverola; Anália Lourenço (Database J. Biol. Databases Curation, 2017)

P4P: a peptidome-based strain-level genome comparison web tool. - Aitor Blanco-Míguez; Florentino Fdez-Riverola; Anália Lourenço; Borja Sánchez (Nucleic Acids Res., 2017)

Resources and tools for the high-throughput, multi-omic study of intestinal microbiota. - Aitor Blanco-Míguez; Florentino Fdez-Riverola; Borja Sánchez; Anália Lourenço (Briefings Bioinform., 2019)

DEWE: A novel tool for executing differential expression RNA-Seq workflows in biomedical research. - Hugo López-Fernández; Aitor Blanco-Míguez; Florentino Fdez-Riverola; Borja Sánchez; Anália Lourenço (Comput. Biol. Medicine, 2019)

Application of agent-based modelling to assess single-molecule transport across the cell envelope of E. coli. - Paulo Maia; Gael Pérez Rodríguez; Martín Pérez-Pérez; Florentino Fdez-Riverola; Anália Lourenço; Nuno F. Azevedo (Comput. Biol. Medicine, 2019)

Online visibility of software-related web sites: The case of biomedical text mining tools. - Gael Pérez Rodríguez; Martín Pérez-Pérez; Florentino Fdez-Riverola; Anália Lourenço (Inf. Process. Manag., 2019)

Computational prediction of the bioactivity potential of proteomes based on expert knowledge. - Aitor Blanco-Míguez; Guillermo Blanco; Alberto Gutiérrez-Jácome; Florentino Fdez-Riverola; Borja Sánchez; Anália Lourenço (J. Biomed. Informatics, 2019)

Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm. - Martín Pérez-Pérez; Gael Pérez Rodríguez; Aitor Blanco-Míguez; Florentino Fdez-Riverola; Alfonso Valencia; Martin Krallinger; Anália Lourenço (J. Cheminformatics, 2019)

Application of Agent-Based Modelling to Simulate Ribosome Translation. - Gael Pérez Rodríguez; Beatriz T. Magalhães; Nuno F. Azevedo; Anália Lourenço (PAAMS, 2020)

The Activity of Bioinformatics Developers and Users in Stack Overflow. - Roi Pérez-López; Guillermo Blanco; Florentino Fdez-Riverola; Anália Lourenço (PACBB, 2020)

A Health-Related Study from Food Online Reviews. The Case of Gluten-Free Foods. - Martín Pérez-Pérez; Anália Lourenço; Gilberto Igrejas; Florentino Fdez-Riverola (PACBB, 2020)

Understanding the social evolution of the Java community in Stack Overflow: A 10-year study of developer interactions. - Guillermo Blanco; Roi Pérez-López; Florentino Fdez-Riverola; Anália Lourenço (Future Gener. Comput. Syst., 2020)

Mining the sociome for Health Informatics: Analysis of therapeutic lifestyle adherence of diabetic patients in Twitter. - Gael Pérez Rodríguez; Martín Pérez-Pérez; Florentino Fdez-Riverola; Anália Lourenço (Future Gener. Comput. Syst., 2020)

A framework to extract biomedical knowledge from gluten-related tweets: The case of dietary concerns in digital era. - Martín Pérez-Pérez; Gilberto Igrejas; Florentino Fdez-Riverola; Anália Lourenço (Artif. Intell. Medicine, 2021)

Computational resources and strategies to assess single-molecule dynamics of the translation process in S. cerevisiae. - Beatriz T. Magalhães; Anália Lourenço; Nuno F. Azevedo (Briefings Bioinform., 2021)

HaemoKBS: A knowledge-based system for real-time, continuous categorisation of adverse reactions in blood recipients. - Augusto Ramoa; Jorge Condeço; Florentino Fdez-Riverola; Anália Lourenço (Neurocomputing, 2021)

Computational Approach to the Systematic Prediction of Glycolytic Abilities: Looking Into Human Microbiota. - Guillermo Blanco; Borja Sánchez; Lorena Ruiz; Florentino Fdez-Riverola; Abelardo Margolles; Anália Lourenço (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Boosting biomedical document classification through the use of domain entity recognizers and semantic ontologies for document representation: The case of gluten bibliome. - Martín Pérez-Pérez; Tânia Ferreira; Anália Lourenço; Gilberto Igrejas; Florentino Fdez-Riverola (Neurocomputing, 2022)

Optimism and pessimism analysis using deep learning on COVID-19 related twitter conversations. - Guillermo Blanco; Anália Lourenço (Inf. Process. Manag., 2022)

Spanish Corpora of tweets about COVID-19 vaccination for automatic stance detection. - Rubén Yáñez Martínez; Guillermo Blanco; Anália Lourenço (Inf. Process. Manag., 2023)

A multilayered graph-based framework to explore behavioural phenomena in social media conversations. - Guillermo Blanco; Anália Lourenço (Int. J. Medical Informatics, 2023)