Cortical Surface Parameterization by P-Harmonic Energy Minimization. - Anand A. Joshi; Richard M. Leahy; Paul M. Thompson; David W. Shattuck (ISBI, 2004)

A Framework for Registration, Statistical Characterization and Classification of Cortically Constrained Functional Imaging Data. - Anand A. Joshi; David W. Shattuck; Paul M. Thompson; Richard M. Leahy (IPMI, 2005)

Simultaneous surface and volumetric registration using harmonic maps. - Anand A. Joshi; David W. Shattuck; Paul M. Thompson; Richard M. Leahy (Computational Imaging, 2007)

Brain Image Registration Using Cortically Constrained Harmonic Mappings. - Anand A. Joshi; David W. Shattuck; Paul M. Thompson; Richard M. Leahy (IPMI, 2007)

A Finite Element Method for Elastic Parameterization and Alignment of Cortical Surfaces Using Sulcal Constraints. - Anand A. Joshi; David W. Shattuck; Paul M. Thompson; Richard M. Leahy (ISBI, 2007)

Generalized Surface Flows for Deformable Registration and Cortical Matching. - Ilya Eckstein; Anand A. Joshi; C.-C. Jay Kuo; Richard M. Leahy; Mathieu Desbrun (MICCAI (1), 2007)

Surface-Constrained Volumetric Brain Registration Using Harmonic Mappings. - Anand A. Joshi; David W. Shattuck; Paul M. Thompson; Richard M. Leahy (IEEE Trans. Medical Imaging, 2007)

Mutual information based non-rigidmouse registration using a scale-space approach. - Sangeetha Somayajula; Anand A. Joshi; Richard M. Leahy (ISBI, 2008)

Optimization of landmark selection for cortical surface registration. - Anand A. Joshi; David W. Shattuck; Dimitrios Pantazis; Quanzheng Li; Hanna Damasio; Richard M. Leahy (CVPR, 2009)

A Framework for Brain Registration via Simultaneous Surface and Volume Flow. - Anand A. Joshi; Richard M. Leahy; Arthur W. Toga; David W. Shattuck (IPMI, 2009)

Optimal Illumination Patterns for Fluorescence Tomography. - Joyita Dutta; Sangtae Ahn; Anand A. Joshi; Richard M. Leahy (ISBI, 2009)

Posture Matching and Elastic Registration of a Mouse Atlas to Surface Topography Range Data. - Anand A. Joshi; Abhijit J. Chaudhari; Changqing Li; David W. Shattuck; Joyita Dutta; Richard M. Leahy; Arthur W. Toga (ISBI, 2009)

A Parameterization-Based Numerical Method for Isotropic and Anisotropic Diffusion Smoothing on Non-Flat Surfaces. - Anand A. Joshi; David W. Shattuck; Paul M. Thompson; Richard M. Leahy (IEEE Trans. Image Process., 2009)

Diffeomorphic sulcal shape analysis for cortical surface registration. - Shantanu H. Joshi; Ryan P. Cabeen; Anand A. Joshi; Roger P. Woods; Katherine L. Narr; Arthur W. Toga (CVPR, 2010)

Anatomical structural network analysis of human brain using partial correlations of gray matter volumes. - Anand A. Joshi; Shantanu H. Joshi; Ivo D. Dinov; David W. Shattuck; Richard M. Leahy; Arthur W. Toga (ISBI, 2010)

A genetic analysis of cortical thickness in 372 twins. - Anand A. Joshi; Natasha Leporé; Shantanu H. Joshi; Agatha D. Lee; Marina Barysheva; Greig I. de Zubicaray; Margaret J. Wright; Katie McMahon; Arthur W. Toga; Paul M. Thompson (ISBI, 2010)

Tetrahedral mesh generation for medical images with multiple regions using active surfaces. - Carl Lederman; Anand A. Joshi; Ivo D. Dinov; John D. Van Horn; Luminita A. Vese; Arthur W. Toga (ISBI, 2010)

Cortical Sulcal Atlas Construction Using a Diffeomorphic Mapping Approach. - Shantanu H. Joshi; Ryan P. Cabeen; Bo Sun; Anand A. Joshi; Boris Gutman; Alen Zamanyan; Shruthi Chakrapani; Ivo D. Dinov; Roger P. Woods; Arthur W. Toga (MICCAI (1), 2010)

A new combined surface and volume registration. - Natasha Leporé; Anand A. Joshi; Richard M. Leahy; Caroline C. Brun; Yi-Yu Chou; Xavier Pennec; Agatha D. Lee; Marina Barysheva; Greig I. de Zubicaray; Margaret J. Wright; Katie L. McMahon; Arthur W. Toga; et al. (Image Processing, 2010)

Sulcal set optimization for cortical surface registration. - Anand A. Joshi; Dimitrios Pantazis; Quanzheng Li; Hanna Damasio; David W. Shattuck; Arthur W. Toga; Richard M. Leahy (NeuroImage, 2010)

Comparison of landmark-based and automatic methods for cortical surface registration. - Dimitrios Pantazis; Anand A. Joshi; Jintao Jiang; David W. Shattuck; Lynne E. Bernstein; Hanna Damasio; Richard M. Leahy (NeuroImage, 2010)

Sex differences in the human connectome: 4-Tesla high angular resolution diffusion imaging (HARDI) tractography in 234 young adult twins. - Neda Jahanshad; Iman Aganj; Christophe Lenglet; Anand A. Joshi; Yan Jin 001; Marina Barysheva; Katie McMahon; Greig I. de Zubicaray; Nicholas G. Martin; Margaret J. Wright; Arthur W. Toga; Guillermo Sapiro; et al. (ISBI, 2011)

Evaluation of connectivity measures and anatomical features for statistical brain networks. - Anand A. Joshi; Shantanu H. Joshi; Moriah E. Thomason; Ivo D. Dinov; Arthur W. Toga (ISBI, 2011)

Skull-stripping with deformable organisms. - Gautam Prasad; Anand A. Joshi; Paul M. Thompson; Arthur W. Toga; David W. Shattuck; Demetri Terzopoulos (ISBI, 2011)

Comparison of volumetric registration algorithms for tensor-based morphometry. - Julio Villalon; Anand A. Joshi; Natasha Leporé; Caroline C. Brun; Arthur W. Toga; Paul M. Thompson (ISBI, 2011)

The generation of tetrahedral mesh models for neuroanatomical MRI. - Carl Lederman; Anand A. Joshi; Ivo D. Dinov; Luminita A. Vese; Arthur W. Toga; John Darrell Van Horn (NeuroImage, 2011)

Resting-state fMRI can reliably map neural networks in children. - Moriah E. Thomason; Emily L. Dennis; Anand A. Joshi; Shantanu H. Joshi; Ivo D. Dinov; Catie Chang; Melissa L. Henry; Rebecca F. Johnson; Paul M. Thompson; Arthur W. Toga; Gary H. Glover; John D. Van Horn; et al. (NeuroImage, 2011)

Correcting susceptibility-induced distortion in diffusion-weighted MRI using constrained nonrigid registration. - Chitresh Bhushan; Justin P. Haldar; Anand A. Joshi; Richard M. Leahy (APSIPA, 2012)

Canonical Granger causality applied to functional brain data. - Syed Ashrafulla; Justin P. Haldar; Anand A. Joshi; Richard M. Leahy (ISBI, 2012)

Genetic influences on sulcal patterns of the brain. - Shantanu H. Joshi; Anand A. Joshi; Boris Gutman; Arthur W. Toga; Katie McMahon; Greig I. de Zubicaray; Nicholas G. Martin; Margaret J. Wright; Paul M. Thompson (ISBI, 2012)

Geodesic curvature flow on surfaces for automatic sulcal delineation. - Anand A. Joshi; David W. Shattuck; Hanna Damasio; Richard M. Leahy (ISBI, 2012)

Robust identification of partial-correlation based networks with applications to cortical thickness data. - David Wheland; Anand A. Joshi; Katie McMahon; Narelle K. Hansell; Nicholas G. Martin; Margaret J. Wright; Paul M. Thompson; David W. Shattuck; Richard M. Leahy (ISBI, 2012)

An Invariant Shape Representation Using the Anisotropic Helmholtz Equation. - Anand A. Joshi; Syed Ashrafulla; David W. Shattuck; Hanna Damasio; Richard M. Leahy (MICCAI (3), 2012)

A Method for Automated Cortical Surface Registration and Labeling. - Anand A. Joshi; David W. Shattuck; Richard M. Leahy (WBIR, 2012)

Non-rigid Image Registration Using Gaussian Mixture Models. - Sangeetha Somayajula; Anand A. Joshi; Richard M. Leahy (WBIR, 2012)

Diffeomorphic Sulcal Shape Analysis on the Cortex. - Shantanu H. Joshi; Ryan P. Cabeen; Anand A. Joshi; Bo Sun; Ivo D. Dinov; Katherine L. Narr; Arthur W. Toga; Roger P. Woods (IEEE Trans. Medical Imaging, 2012)

A measure of connectivity in the presence of crosstalk. - Sergül Aydöre; Syed Ashrafulla; Anand A. Joshi; Richard M. Leahy (ACSSC, 2013)

Morphometry for early monitoring of treatment response in rheumatoid arthritis. - Anand A. Joshi; Richard M. Leahy; Ramsey Derek Badawi; Abhijit J. Chaudhari (ISBI, 2013)

Exploratory factor analysis of brain networks reveals sub-networks related to cognitive performance. - Kenia Martínez; Julio Villalon-Reina; Dominique Kessel; Anand A. Joshi; José Angel Pineda-Pardo; Neda Jahanshad; Talia M. Nir; Kristian M. Eschenburg; Francisco J. Román; Miguel Burgaleta; Ana Beatriz Solana; M. Ángeles Quiroga; et al. (ISBI, 2013)

Canonical granger causality between regions of interest. - Syed Ashrafulla; Justin P. Haldar; Anand A. Joshi; Richard M. Leahy (NeuroImage, 2013)

Analysis of structural brain connectivity in 6 cases of hemispherectomy. - Kristian M. Eschenburg; Julio Villalon-Reina; Neda Jahanshad; Talia M. Nir; Madelaine Daianu; Anand A. Joshi; Cassandra D. Leonardo; Stella de Bode; Susan Y. Bookheimer; Noriko Salamon; Paul M. Thompson (ISBI, 2014)

Reproducibility of brain-cognition relationships using different cortical surface-based analysis protocols. - Kenia Martínez; Anand A. Joshi; Sarah K. Madsen; Shantanu H. Joshi; Sherif Karama; Francisco J. Román; Julio Villalon-Reina; Miguel Burgaleta; Paul M. Thompson; Roberto Colom (ISBI, 2014)

Measuring Asymmetric Interactions in Resting State Brain Networks. - Anand A. Joshi; Ronald Salloum; Chitresh Bhushan; Richard M. Leahy (IPMI, 2015)

Co-registration and distortion correction of diffusion and anatomical images based on inverse contrast normalization. - Chitresh Bhushan; Justin P. Haldar; Soyoung Choi; Anand A. Joshi; David W. Shattuck; Richard M. Leahy (NeuroImage, 2015)

Impact of Early and Late Visual Deprivation on the Structure of the Corpus Callosum: A Study Combining Thickness Profile with Surface Tensor-Based Morphometry. - Jie Shi 001; Olivier Collignon; Liang Xu; Gang Wang 029; Yue Kang; Franco Leporé; Yi Lao; Anand A. Joshi; Natasha Leporé; Yalin Wang 001 (Neuroinformatics, 2015)

Riemannian Statistical Analysis of Cortical Geometry with Robustness to Partial Homology and Misalignment. - Suyash P. Awate; Richard M. Leahy; Anand A. Joshi (MICCAI (1), 2016)

A Unified Variational Volume Registration Method Based on Automatically Learned Brain Structures. - Carl Lederman; Anand A. Joshi; Ivo D. Dinov; John Darrell Van Horn; Luminita A. Vese; Arthur W. Toga (J. Math. Imaging Vis., 2016)

Registration-Based Morphometry for Shape Analysis of the Bones of the Human Wrist. - Anand A. Joshi; Richard M. Leahy; Ramsey Derek Badawi; Abhijit J. Chaudhari (IEEE Trans. Medical Imaging, 2016)

Kernel Methods for Riemannian Analysis of Robust Descriptors of the Cerebral Cortex. - Suyash P. Awate; Richard M. Leahy; Anand A. Joshi (IPMI, 2017)

Automatic segmentation of fetal brain using diffusion-weighted imaging cues. - Rosita Shishegar; Anand A. Joshi; Mary Tolcos; David W. Walker; Leigh A. Johnston (ISBI, 2017)

BrainSync: An Orthogonal Transformation for Synchronization of fMRI Data Across Subjects. - Anand A. Joshi; Minqi Chong; Richard M. Leahy (MICCAI (1), 2017)

A whole brain atlas with sub-parcellation of cortical gyri using resting fMRI. - Anand A. Joshi; Soyoung Choi; Gaurav Sonkar; Minqi Chong; Jorge Gonzalez-Martinez; Dileep Nair; David W. Shattuck; Hanna Damasio; Richard M. Leahy (Image Processing, 2017)

An algorithm for automatic parameter adjustment for brain extraction in BrainSuite. - Gautham Rajagopal; Anand A. Joshi; Richard M. Leahy (Image Processing, 2017)

Individual parcellation of resting fMRI with a group functional connectivity prior. - Minqi Chong; Chitresh Bhushan; Anand A. Joshi; Soyoung Choi; Justin P. Haldar; David W. Shattuck; R. Nathan Spreng; Richard M. Leahy (NeuroImage, 2017)

Global PDF-based temporal non-local means filtering reveals individual differences in brain connectivity. - Jian Li 033; Soyoung Choi; Anand A. Joshi; Jessica L. Wisnowski; Richard M. Leahy (ISBI, 2018)

Using the Anisotropic Laplace Equation to Compute Cortical Thickness. - Anand A. Joshi; Chitresh Bhushan; Ronald Salloum; Jessica L. Wisnowski; David W. Shattuck; Richard M. Leahy (MICCAI (3), 2018)

rfDemons: Resting fMRI-Based Cortical Surface Registration Using the BrainSync Transform. - Anand A. Joshi; Jian Li 033; Minqi Chong; Haleh Akrami; Richard M. Leahy (MICCAI (3), 2018)

WRIST: A WRist Image Segmentation Toolkit for carpal bone delineation from MRI. - Brent Foster; Anand A. Joshi; Marissa Borgese; Yasser Abdelhafez; Robert D. Boutin; Abhijit J. Chaudhari (Comput. Medical Imaging Graph., 2018)

Are you thinking what I'm thinking? Synchronization of resting fMRI time-series across subjects. - Anand A. Joshi; Minqi Chong; Jian Li 033; Soyoung Choi; Richard M. Leahy (NeuroImage, 2018)

A Matched Filter Decomposition of fMRI into Resting and Task Components. - Anand A. Joshi; Haleh Akrami; Jian Li 033; Richard M. Leahy (MICCAI (3), 2019)

Group-wise alignment of resting fMRI in space and time. - Haleh Akrami; Anand A. Joshi; Jian Li 033; Richard M. Leahy (Image Processing, 2019)

Predicting cognitive scores from resting fMRI data and geometric features of the brain. - Anand A. Joshi; Jian Li 033; Haleh Akrami; Richard M. Leahy (Image Processing, 2019)

Brain network identification in asynchronous task fMRI data using robust and scalable tensor decomposition. - Jian Li 033; Jessica L. Wisnowski; Anand A. Joshi; Richard M. Leahy (Image Processing, 2019)

Robust Variational Autoencoder. - Haleh Akrami; Anand A. Joshi; Jian Li 033; Richard M. Leahy (CoRR, 2019)

Brain Lesion Detection Using A Robust Variational Autoencoder and Transfer Learning. - Haleh Akrami; Anand A. Joshi; Jian Li 033; Sergül Aydöre; Richard M. Leahy (ISBI, 2020)

A Network-Based Approach to Study of Adhd Using Tensor Decomposition of Resting State Fmri Data. - Jian Li 033; Anand A. Joshi; Richard M. Leahy (ISBI, 2020)

Robust Variational Autoencoder for Tabular Data with Beta Divergence. - Haleh Akrami; Sergül Aydöre; Richard M. Leahy; Anand A. Joshi (CoRR, 2020)

Addressing Variance Shrinkage in Variational Autoencoders using Quantile Regression. - Haleh Akrami; Anand A. Joshi; Sergül Aydöre; Richard M. Leahy (CoRR, 2020)

Realistic head modeling of electromagnetic brain activity: An integrated Brainstorm pipeline from MRI data to the FEM solution. - Takfarinas Medani; Juan Garcia-Prieto; François Tadel; Sophie Schrader; Anand A. Joshi; Christian Engwer; Carsten H. Wolters; John C. Mosher; Richard M. Leahy (CoRR, 2020)

fMRI-Kernel Regression: A Kernel-based Method for Pointwise Statistical Analysis of rs-fMRI for Population Studies. - Anand A. Joshi; Soyoung Choi; Haleh Akrami; Richard M. Leahy (CoRR, 2020)

Temporal non-local means filtering for studies of intrinsic brain connectivity from individual resting fMRI. - Jian Li 033; Soyoung Choi; Anand A. Joshi; Jessica L. Wisnowski; Richard M. Leahy (Medical Image Anal., 2020)

Quantile Regression for Uncertainty Estimation in VAEs with Applications to Brain Lesion Detection. - Haleh Akrami; Anand A. Joshi; Sergül Aydöre; Richard M. Leahy (IPMI, 2021)

Prediction of posttraumatic epilepsy using machine learning. - Haleh Akrami; Andrei Irimia; Wenhui Cui; Anand A. Joshi; Richard M. Leahy (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2021)

A pairwise approach for fMRI group studies using the BrainSync Transform. - Anand A. Joshi; Soyoung Choi; Jian Li 033; Haleh Akrami; Richard M. Leahy (Image Processing, 2021)

Bias field correction in 3D-MRIs using convolutional autoencoders. - Shashank N. Sridhara; Haleh Akrami; Vaishnavi Krishnamurthy; Anand A. Joshi (Image Processing, 2021)

Deep Quantile Regression for Uncertainty Estimation in Unsupervised and Supervised Lesion Detection. - Haleh Akrami; Anand A. Joshi; Sergül Aydöre; Richard M. Leahy (CoRR, 2021)

Robust brain network identification from multi-subject asynchronous fMRI data. - Jian Li 033; Jessica L. Wisnowski; Anand A. Joshi; Richard M. Leahy (NeuroImage, 2021)

PET Denoising and Uncertainty Estimation Based on NVAE Model Using Quantile Regression Loss. - Jianan Cui; Yutong Xie 004; Anand A. Joshi; Kuang Gong; Kyung Sang Kim; Young-Don Son; Jong Hoon Kim; Richard M. Leahy; Huafeng Liu 003; Quanzheng Li (MICCAI (4), 2022)

Semi-supervised Learning using Robust Loss. - Wenhui Cui; Haleh Akrami; Anand A. Joshi; Richard M. Leahy (CoRR, 2022)

Learning from imperfect training data using a robust loss function: application to brain image segmentation. - Haleh Akrami; Wenhui Cui; Anand A. Joshi; Richard M. Leahy (CoRR, 2022)

Semi-supervised Learning with Robust Loss in Brain Segmentation. - Hedong Zhang; Anand A. Joshi (CoRR, 2022)

Toward Improved Generalization: Meta Transfer of Self-supervised Knowledge on Graphs. - Wenhui Cui; Haleh Akrami; Anand A. Joshi; Richard M. Leahy (CoRR, 2022)

A robust variational autoencoder using beta divergence. - Haleh Akrami; Anand A. Joshi; Jian Li 033; Sergül Aydöre; Richard M. Leahy (Knowl. Based Syst., 2022)

BundleCleaner: Unsupervised Denoising and Subsampling of Diffusion MRI-Derived Tractography Data. - Yixue Feng 001; Bramsh Qamar Chandio; Julio E. Villalon-Reina; Sophia I. Thomopoulos; Himanshu Joshi; Gauthami Nair; Anand A. Joshi; Ganesan Venkatasubramanian; John P. John; Paul M. Thompson (CDMRI@MICCAI, 2023)

Neuro-GPT: Developing A Foundation Model for EEG. - Wenhui Cui; Woojae Jeong; Philipp Thölke; Takfarinas Medani; Karim Jerbi; Anand A. Joshi; Richard M. Leahy (CoRR, 2023)

Meta Transfer of Self-Supervised Knowledge: Foundation Model in Action for Post-Traumatic Epilepsy Prediction. - Wenhui Cui; Haleh Akrami; Ganning Zhao; Anand A. Joshi; Richard M. Leahy (CoRR, 2023)

Brainstorm-DUNEuro: An integrated and user-friendly Finite Element Method for modeling electromagnetic brain activity. - Takfarinas Medani; Juan Garcia-Prieto; François Tadel; Marios Antonakakis; Tim Erdbrügger; Malte Hoeltershinken; Wayne Mead; Sophie Schrader; Anand A. Joshi; Christian Engwer; Carsten H. Wolters; John C. Mosher; et al. (NeuroImage, 2023)

Beta Quantile Regression for Robust Estimation of Uncertainty in the Presence of Outliers. - Haleh Akrami; Omar Zamzam; Anand A. Joshi; Sergül Aydöre; Richard M. Leahy (ICASSP, 2024)

Neuro-GPT: Towards A Foundation Model For EEG. - Wenhui Cui; Woojae Jeong; Philipp Thölke; Takfarinas Medani; Karim Jerbi; Anand A. Joshi; Richard M. Leahy (ISBI, 2024)

Generalizable Representation Learning for fMRI-based Neurological Disorder Identification. - Wenhui Cui; Haleh Akrami; Anand A. Joshi; Richard M. Leahy (Trans. Mach. Learn. Res., 2025)

Multi-Center Fetal Brain Tissue Annotation (FeTA) Challenge 2022 Results. - Kelly Payette; Céline Steger; Roxane Licandro; Priscille de Dumast; Hongwei Bran Li; Matthew J. Barkovich; Liu Li; Maik Dannecker; Chen Chen 042; Cheng Ouyang; Niccolò McConnell; Alina Dana Miron; et al. (IEEE Trans. Medical Imaging, 2025)

Modeling and Reversing Brain Lesions Using Diffusion Models. - Omar Zamzam; Haleh Akrami; Anand A. Joshi; Richard M. Leahy (CoRR, 2025)