Improving reproducibility in computational biology research. - Jason A. Papin; Feilim Mac Gabhann; Herbert M. Sauro; David P. Nickerson; Anand K. Rampadarath (PLoS Comput. Biol., 2020)

libOmexMeta: enabling semantic annotation of models to support FAIR principles. - Ciaran M. Welsh; David P. Nickerson; Anand K. Rampadarath; Maxwell Lewis Neal; Herbert M. Sauro; John H. Gennari (Bioinform., 2021)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (CoRR, 2022)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (Nucleic Acids Res., 2022)

Building a search tool for compositely annotated entities using Transformer-based approach: Case study in Biosimulation Model Search Engine (BMSE). - Yuda Munarko; Anand K. Rampadarath; David P. Nickerson (F1000Research, 2023)

CASBERT: BERT-based retrieval for compositely annotated biosimulation model entities. - Yuda Munarko; Anand K. Rampadarath; David P. Nickerson (Frontiers Bioinform., 2023)