Sibelia: A Scalable and Comprehensive Synteny Block Generation Tool for Closely Related Microbial Genomes. - Ilya Minkin; Anand Patel; Mikhail Kolmogorov; Nikolay Vyahhi; Son K. Pham (WABI, 2013)

Leveraging LLMs for Legacy Code Modernization: Challenges and Opportunities for LLM-Generated Documentation. - Colin Diggs; Michael Doyle; Amit Madan; Siggy Scott; Emily Escamilla; Jacob Zimmer; Naveed Nekoo; Paul Ursino; Michael Bartholf; Zachary Robin; Anand Patel; Chris Glasz; et al. (CoRR, 2024)

Leveraging LLMs for Legacy Code Modernization: Evaluation of LLM-Generated Documentation. - Colin Diggs; Michael Doyle; Amit Madan; Eric O. Scott; Emily Escamilla; Jacob Zimmer; Naveed Nekoo; Paul Ursino; Michael Bartholf; Zachary Robin; Anand Patel; Chris Glasz; et al. (LLM4Code@ICSE, 2025)

Can LLMs Replace Humans During Code Chunking? - Christopher Glasz; Emily Escamilla; Eric O. Scott; Anand Patel; Jacob Zimmer; Colin Diggs; Michael Doyle; Scott Rosen; Nitin Naik; Justin F. Brunelle; Samruddhi Thaker; Parthav Poudel; et al. (CoRR, 2025)